RNA id: AMCG00007574


Basic Information

Item Value
RNA id AMCG00007574
length 3212
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00007574
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22545534 ~ 22551557 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCACGGGAGGTGGAGCAGCGCAAAATGTCGAGGGCCAGGCTTCCAATTTCGCACACTCGGGAGCGGGGAGAAACGCAGCGACGGTGGCCGCTGCAGCTgcggccgccgccgccgccgccgccgctacCGCCGCAGCCGCCCCCAGTCCCCCTCCGTCCATGGGCCTGCAGCGGGAGCCCATGTATAACTGGCAGGCCACCAAGAGCTCCGTGAAAGAGCGCTTCGCTTTCCTCTTCAACAACGACCTGCTCAGCGACGTGCGGTTTGTGGTGGGCAAGGGACGGCAGGCTCAGAGGATCCCCGCACACAAGTTCGTGCTGGCGGCTGGCAGCGCCGTGTTTGACGCCATGTTTAACGGGGGGATGGCTACTACCTCTGCCGAAATCGAGCTGCCTGACGTGGAGCCAGCTGCCTTCCTGGCTTTGCTCAGGTTTCTTTATTCAGATGAAGTTCATATAGGTCCGGAGACAGTCATGACCACTCTCTATACTGCTAAAAAATACGCAGTCCCAGCATTGGAAACGCACTGTGTAGAGTTTCTTACCAAGCACCTCCGAGCTGACAATGCTTTTATGCTCCTTACACAGGCTAGGTTGTTTGATGAACCTCTGCTTGCCAGCCTTTGCTTAGATACAATAGATAAAAGCACCGCAGATGCAATAAGTGCTGAAGGCTTCACGGACATTGATCTAgATACACTCTGCGCTGTGCTGGAGAGAGACACTTTGGGAATTCGAGAGAGCCGGCTTTTTGCCGCTGTAGTTCGCTGGGCTGAAGCCGAATGTTATCGGCAACAGCTCCCACTtacttcagaaaacaaacaaaaagtactgGGAAAAGCTCTGTCACTAATCCGTTTTCCATTGATGACAGTGGAAGAGTTTGCTGCAGGGCCTGCCCAGTCTGGGATTTTGTTCGATCGGGAGGTGGTAAATCTGTTTTTACACTTTACAGTAAACCCCAAACCCCGGGTTGACTACATCGACAGGCCAAGATGTTGTCTCAGGGGAAAGGAATGCAGCATTAATAGATTCCAGCAGGTAGAGAGTCGCTGGGGATATAGTGGAACCAGTGACAGAATAAGgTTCAGTGTTAGTAGAAGAATATCTATAGTGGGTTTTGGGCTTTATGGATCTATACATGGACCAACAGACTATCAGGTCAACATTCAGaTTATTGAAAGTGACAAAAGCCAAACACTTGGACAAAATGATACAGGATTTAGTTGTGATGGAACTGCTAACACGTTTAGGGTCATGTTTAAGGAACCTATAGAAATCATCCCAAATgGTCCAGATTCACACTATGGCACAAAAGGATTAAAGAAGATTGTCCATGAATCAGCCACAGGGACCAAAAcaagttttttcttcttaagtTCACCTGGGAATAACAATGGCACTTCAGTGGAAGATGGCCAGATACCGGAGatcattttttatacataaacCAAGGAACAGCACCCTCTCACTGGAAAGCTTACCAAGCTGATACAGGAGAGCATGCAACATTTTCAAGAATTACAGAGAGGACTTTAGCATGGAAATTCATGTCTGgctctctttgtgtgtttttgtttttttagtacTGTAGAAAGGGTGCTACAGGtgaagtggattttttttttttttttttttttaagaaattaagcAGATAGAAGGAAGTACTGAACACTGACATTTAATGGAACCATATGAGTTCATCTCTACTGCAATTCTTCATTTAGGCCTGGGGTATCCcatgcttttttattaaaacaaatttggCTATAATACATGGATTCCTAAGttgaatttttaatatttagccaatatgcttactgtaaaattaaataaagtgcaacTTTCAGCCTGGTCAGGGACTGCTCAAGGAGCTATATGTAGCATGTAAATAGCTGCAGCATTTATCATACTTGTATATCATTCATGGCTAACAGAAATGCActctaaacatttaaaacaaatgtagacaATGAAGATTacctgaataaaatacaattgagAATTACCTGAACACTTTTGTAGTCTTGCCTTCTGTAAAATACACCTAAAACTATATTAAATGTGGACCTTAAGACACAGCTTTTACAGGTGTTTATTGTTGCCTGATCAAATGTCCTTAAAGTTTTATGGTCGTGGTCAGCAAATACAATGCCTTTCATTTCTCACAGAACAATGGTATGTTGAAACCTAGGAAAAATGTACTGTCGTGCagtctgtgttttaatgtattgtaggaTCTGTAAGATTTTAATAGAATGTAATACAAAAGGGGCAACATGGGTATATTGCCACAGCAAACATACTTATCATATCACTTTTACTACAAGAAAGAACAAAGAAATGTAACTTTTCTTTGTACACCATACAGGGAAATCTTGAACAATAAACGTAgcatttacaaatttaaaatgagtGTTTTTGGAAGTGAGACTGCATTATACTGCATTAGCTGAATTCCTGGAATTCTACCtataatattttgttcatcatacagaataaaatagaaacaaactCCACACTCTGAGCTCTAACTGGgtctaatatataatatattgaagctttaaattatttcaaaggCTGAGGTTATATGTAATAGTGGCCCTATACAGATCTATAAACTGTAGTTTGTCATTTTACAAACTTGCAGCAACATAAAtgtcttccttttttctttttttgtaaagttaattaaaagtattgtatgttttttgggTCCAGACCAGATCGCTTATGAAGATTCATGTCGCTCTTTATATCTCTTGAGCAGCTGCACTGCGTGGATGTGGTTGTACCTCACGGCTTCTTGCAAAGGTGTATTTCCCCATCtgtgaataaattaaagtggaatacattaattggaagcaaagcaaaataattgaaataagcAAGCTTTACAAAGCAGCTTCAGTGCAGGCTttcattgaaaatgtttgtattgattcagttttcaaatgacaaatgtaaatcTAAACTGAGTGGCAGTTTTGCCAAAAATTTGAGGAAGAATTGAGGAGTTTGAGGAAGAATGACAATACCTGTCATGGGTCATGAAATCTGCCCCAGCGTTTTCAACAAGGAACTTTATAACTTCAAGGTGTCCCTCCGAGGCGGCAACATGCAGGGCAGACCTCCCATCATAGTCGACAGAATGTACATCAGCTCCTGACAGAAAGTACCTGTATAATCAGTTTGAGTTTTTATTGCAA

Function

GO: NA

KEGG:

id description
K10477 BTBD1_2; BTB/POZ domain-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31016 lncRNA downstream 24450 22518422 ~ 22521084 (-) True G24721
TU30996 lncRNA downstream 96580 22446370 ~ 22448954 (-) True G24705
TU30974 lncRNA downstream 113221 22432067 ~ 22432313 (-) True G24687
TU30958 lncRNA downstream 187088 22355450 ~ 22358446 (-) False AMCG00007565
TU30913 lncRNA downstream 283041 22260847 ~ 22262493 (-) True G24640
TU31045 lncRNA upstream 12534 22564091 ~ 22576454 (-) False AMCG00007572
TU31117 lncRNA upstream 402528 22954085 ~ 22954844 (-) True G24797
TU31120 lncRNA upstream 494556 23046113 ~ 23046373 (-) True G24800
TU31138 lncRNA upstream 582234 23133791 ~ 23134802 (-) True G24816
TU31252 lncRNA upstream 855395 23406952 ~ 23420303 (-) True AMCG00007594
AMCG00007573 mRNA downstream 10356 22532656 ~ 22535178 (-) True AMCG00007573
AMCG00007571 mRNA downstream 58119 22475410 ~ 22487415 (-) True AMCG00007571
AMCG00007564 mRNA downstream 75103 22449285 ~ 22470431 (-) True AMCG00007564
AMCG00007565 mRNA downstream 188124 22340599 ~ 22357410 (-) True AMCG00007565
AMCG00007566 mRNA downstream 208460 22332066 ~ 22337074 (-) True AMCG00007566
AMCG00007572 mRNA upstream 9939 22561496 ~ 22576449 (-) True AMCG00007572
AMCG00007576 mRNA upstream 32172 22583729 ~ 22618108 (-) True AMCG00007576
AMCG00007579 mRNA upstream 134679 22686236 ~ 22687435 (-) True AMCG00007579
AMCG00007578 mRNA upstream 145872 22697429 ~ 22707695 (-) True AMCG00007578
AMCG00007584 mRNA upstream 301338 22852895 ~ 22856761 (-) True AMCG00007584
TU30382 other downstream 2072830 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2213723 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2622381 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3767896 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4486585 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1420114 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1714267 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2712775 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 3079238 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12317878 34869435 ~ 34869807 (-) True G26961

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000075_01372627_01381776.mRNA False 4869 mRNA 0.47 9 CI01000075 1371853 ~ 1384122 (-)