RNA id: AMCG00007578


Basic Information

Item Value
RNA id AMCG00007578
length 3341
RNA type mRNA
GC content 0.46
exon number 11
gene id AMCG00007578
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22697429 ~ 22707695 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCCAACGTGCTGTTGACCTTGTCATGTGACGTCACCCTCTCTATTTAGAGTCCGACATTGCTAAACAGCTGTTCGCAGAGCAGTGAGTTCTCTCTggaattaaaagaaagagcTTTAATTGCCGGTATTTATCCGGGAGGGCAAGACTGTGGCAAAAGATCACTTCTTAACCATTTTAATCCGTGTTTGCAGAGGGTGTGTTTAGGACACGCATTCCTAAGTTCTCCTTCATCAAACGCTGGTATTTGATGGTGCCGGCGCACTTTGCTTCCTCACGTTTTAAGATGCCACCAGTGACGTCGGCGTAAAGACAGTGTAGTGGGTATAGTATAGCAGTAAGCAGTATAGCAGCCTGGACGAGAGATTAGCAGGTGTATTCCCATTTCTTATCAATGGCTTTTGTTACCCCACCCCCGTCCGCCTCCACAAGCCGGGTATCTCGCAGCACCAGACGGAGCACCGGCGTAGGCGTCTCCCCGTCCACCTCCAGTCCCACCCGCCTGAGTCGCCTGCAGGAGAAGGAGGACCTCCGGCAGCTGAATGACCGACTGGCCGCTTACATCGACCGAGTCCAGCAGCTGGAGAATGACAAGGCTGCCATCCGGCTCCTGCTGGAGGAGACGGAGGAGAGCTCGTCCCGGGAGGTGGGCAAGATCCGGCTGCTGTACGACTCCGAGCTCGCCGAGGCCAGGAAGCTCCTGGAAACCACGGCCAACGAGAGAGCCCGGCTGCAGCTGGAGCTGGGCAAACTGGCGCAGGACCACCAGCAGCTGCAAGCCAGgaATGGTAAAAAGGAGTCTGAATTGACCTCGACAGCGAATCGTTTGAGGAATCTTGAAGCTCTTCTGAACTCCAAAGAAGCAGAGTTGGCTAATCTCCTGTCTGGAAACCGAAGACTAGAAACCGAACTATCTGAACTAAAGTCTCAGATCACGAATCTGGAGTCCTCTTTGAACGATGCTAGGACACAGCTTCACGATGAGATGCTGCAACGGGTCGATGTGCAGAATCAAATCCAGACACTACGGGAACAAATGGACTTCCAGAAACAGCTGCATGAAGATGAGATCCTGAAGATGAGAAGCCGCCATGAAACAAAGTTGGTGGAGATCGAGTCTGGGCGACAGAAGGAAATTGAGAGTAAACTTACGGAGGCGCTGAGGCAGCTACGAAGTGAACATGAGGGTCAAATACAGCAATATAAAGAGGATCTTGAGAGAACCTTCAGCGCCAAGCTGGAGAACGCACAGCTAGCTGCTGCCAAGAACAGTGATTTTGCCTGTGCCGCCAGGGAAGAGCTCATGGGAACCAAAACGAGAGTGGAAACTTTATCATCACAGCTCAGCCAGTTTCAAAAGCAGAACACAGCCCTGGAAGCGAAGGTGCGGGGTCTGGAAGAGATGCTGGACCAGGAGAGAGAGTCGAGCCACCGCCGTTTGACTCAGAAAGATCAGGAGATGGCAGACATTAGACAGCAGATGCAGGGTCAGCTGGAGGAATATGCCAATCTGCTGGATGTCAAACTGGCTTTAGACATGGAGATCAATGCATACAGGAAAATGCTGGAAGGAGAAGAGCAGAGGCTGAATCTGTCCCCGAGCCCCTCCCAGCGCATGGCAGCCCCTCGCACTCATGGTGCTCGGAAAGCAAGAGGCAAGAAGAGGAAGCTGGAGGATCGAACCAGTGCTTACAAAATCTCCCAGCATTCCTCCAGTGTTGGCAGTGTGATTGTTGATGAGATTGACCTGGAGGGAAACTTTGTAAGGCTCAGGAACAGTTCTGAACACGACCAGCCTATGGGTGGATGGGTTCTCAAAAGTTTCACCACAGTGCCAGACACTGCCTTCAAAATCCCATCTCTGTTTGTGCTCCGAGCGGGGCAGACGCTCACTGTTTGGGCAGCAGGTTCGGGGGTTAACCCAAATCCTCCCAGTGATTTTGTCTGGAAGAATCAGAGTACCTGGGGAACATGCAGTGATGTAAGGATTGTGCTGGTAAACTCCCGTGACGAGGTGACCGCAGAGCGAACGCTGTTCCGGACCCAGAGAGAAGGCGAGGGAGACTCCGATGAGGATTTTAATGAAGAGGTGGTCAGTGGCAGTGAGGTGCACTTCCGACGGCCGgGGTGTCACACAGTTGAAGATCCCAGCTGTGCCGTTATGTAACCTTGCAAATGCTTGGCCTGGAAATCCGAATGTGAAGATGCCAATACTGGAGTTGACCCCCTGACCTCCCCAATACGTGCGCCAGTTCACATTGTGACTTGGCTCATCTGCAAATACCTTATTAACCAATTGTTGAAATGCATCCCTTATAAAGGATCTAACAGTATTCCCTTTTGTAATGAGATTCCTTGTTAAGGATGGACTTGCAACAAAAGTTAGTATTTAGAAACCTTAACCATATATGTTGTGGATTATCACCTCCTCGCTGCTTAACaatgaatgtaatttaaattgcattactaGATAAGAGAACGCATGATCAAGAGTATCTCAGGATTTACTGGCCTGTGCCTTGGTTGAATGACAGACTGAGAATAGTCAGCACAGCTACCCTGGTGCTATGATTTCTAACAAAGGTCAGTTTcactatattattttttctttacttaatacatctatatattttattcatttaggACCtggtaaatatgatttatgCTTTGCACAATAGTAATTCTATTAAATAAGCCTGCCCACAAAATGGAACTCTTAGCACTTTCTTTCCTTAGAACCACAGAGGATTGCGTCTTTGTGTGTCTTGGTTTCAATTGGAATATTGTAAATGTGGTTTGGGACACCATATAATGGGATTTTAGCATCTGAGattttatatgattatataaatGTGATAATATGCATCCTATGCACGTGCAGTGGCCAAGGTATTATTCAGGATGTTTGTAAGGTTACCCataggtttttttgttttatttttattattactacagattttttaaagtgtattaaGTTAATTGATTTTTGTGTCAGACCAATTTGTAAGTACaccacaagtttttttttgttttcctcccccCTCTTGTATTGCATGGTTATTTAGCTTTCCAGGGTCGGACTGATTATTCTAGGCATCTACTGTTATTAACCGGTACCAATCTCATTGATCAACACTATTCTACTATTCTGTGTTTACACACTGTTATATAAAGTAgtgaaaactgttttaaaatgcagtgacCTTTATAATCTTTATTCAGTTTTTGGCTAAATATTGCCATTTGTGAAGAATGCCAACATGTCTCTTCAGTCattgtaaattataaaaacaaattattttgtattcattttaataaagatttattACATAATAGCATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31045 lncRNA downstream 120975 22564091 ~ 22576454 (-) False AMCG00007572
TU31016 lncRNA downstream 176345 22518422 ~ 22521084 (-) True G24721
TU30996 lncRNA downstream 248475 22446370 ~ 22448954 (-) True G24705
TU30974 lncRNA downstream 265116 22432067 ~ 22432313 (-) True G24687
TU30958 lncRNA downstream 338983 22355450 ~ 22358446 (-) False AMCG00007565
TU31117 lncRNA upstream 246390 22954085 ~ 22954844 (-) True G24797
TU31120 lncRNA upstream 338418 23046113 ~ 23046373 (-) True G24800
TU31138 lncRNA upstream 426096 23133791 ~ 23134802 (-) True G24816
TU31252 lncRNA upstream 699257 23406952 ~ 23420303 (-) True AMCG00007594
TU31257 lncRNA upstream 715918 23423613 ~ 23437517 (-) True G24905
AMCG00007579 mRNA downstream 9994 22686236 ~ 22687435 (-) True AMCG00007579
AMCG00007576 mRNA downstream 79321 22583729 ~ 22618108 (-) True AMCG00007576
AMCG00007572 mRNA downstream 120980 22561496 ~ 22576449 (-) True AMCG00007572
AMCG00007574 mRNA downstream 145872 22545534 ~ 22551557 (-) True AMCG00007574
AMCG00007573 mRNA downstream 162251 22532656 ~ 22535178 (-) True AMCG00007573
AMCG00007584 mRNA upstream 145200 22852895 ~ 22856761 (-) True AMCG00007584
AMCG00007587 mRNA upstream 431827 23139522 ~ 23166677 (-) True AMCG00007587
AMCG00007588 mRNA upstream 461673 23169368 ~ 23173117 (-) True AMCG00007588
AMCG00007592 mRNA upstream 482488 23190183 ~ 23191247 (-) True AMCG00007592
AMCG00007590 mRNA upstream 499607 23207302 ~ 23268900 (-) True AMCG00007590
TU30382 other downstream 2224725 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2365618 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 2774276 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 3919791 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 4638480 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 1263976 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1558129 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2556637 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 2923100 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 12161740 34869435 ~ 34869807 (-) True G26961

Expression Profile