RNA id: AMCG00007580


Basic Information

Item Value
RNA id AMCG00007580
length 2028
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00007580
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22950692 ~ 22953518 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCGAGTGAGCTGGGGAGGGGCTCCTTTAAGGAACGTTGCCATCGCCGGCATTCCAGCATTCTAGAACTCCGGGTCCGCGTTCTAACTGTGCCGTACAAATCTGGGAGCCGGTTTCAGAGACAGTCCGCGTTGGCCCGATGCACTGATTACTGACTGCAGAGAAGGAGAAGCACTGATTTTGCACCACTGGCTTAAAAAAATACCCaatcccccccctctctctcttcccttaCCAGTCCTGCCCTCCttccttagtttttttttcccctttgtctGATCTTCCTGATCCCGGAGACTGCGAGATATCAAAGATGCCCAGCTCGCTTTTTGCCGACATGGAGCGGAATGGGAGCCACCAAGGGGATACCCTGGATGACCAAAGAGCCTTACAGATCGCACTAGACCAGCTCTCTTTGCTCGGGTTGGACAACGATGACAATTCCATCTACGACAACGAGCCGAGGAAAAAGAGCGTGAACATGACTGAGTGTGTGCCAGTTCCCAGTTCCGAGCATGTAGCCGAAATTGTGGGCAGGCAAGGTTGCAAAATCAAAGCCCTGCGAGCAAAGACCAACACCTATATCAAGACTCCAGTGCGTGGGGAGGAACCAGTCTTTGTTGTGACCGGTAGAAGGGAAGATGTAGCAATGGCCAGGAGGGAAATCATCTCGGCAGCTGAGCATTTCTCAATGATCCGAGCCTCCAGGAACAAAAACACCAGCTTGAATGGAAGTGGTACTGTGCCTGGACCGCCCAACCTTCCTGGGCAGACCACCATTCAGGTGCGGGTGCCCTACAGAGTAGTTGGGTTGGTGGTGGGTCCGAAGGGAGCGACCATCAAGCGTATCCAGCAGCAGACGCACACCTACATTGTCACACCCAGCCGGGACAAGGAGCCAGTCTTCGAGGTCACGGGCATGCCTGAGAATGTGGACCGAGCCAGGGAAGAGATTGAAGCACACATCGCCATGCGCACCGGGGGGCTCATAGAGCTGACAGACGAGAACGATTTCCATGCCAACGGTACAGATGTGGGCTTCGACCTCCATGGTCCCGGAAGCCTGTGGAGCAAGCCCACCTCCACTATGACCCCCACTTCTGGACGCAAGCCTTTCTCCAATTACCGCAACGACAGCTCCAGCTCTTTGGGCAGCGCCTCCACAGACTCGTACTTTGGGAACAACAGCAGCTCCAGGCTGGCTGACTACAGCCCACCCAGCCCAGCCTTGAGCTACACTGCTTCCAAcaatggcaacaacaacaacaacaacgtcaACATCAATGTGAACAGCAATGGCAATGGATTTGTCTATGGGAGTGATGTGATTTCACCCGATTGCACTGACTTAGCCTTTGAGTCCCCTCCAGGATTCGACCCTGCACCTGCTCCCCCGGGTTCCACCCTGATCTGGTCACAGTACGAATGCGGTGTGGCCCCTTCTAACGCCACCACCTCCCCCATCTTTACAGCCAGTGCTTCCACTAATGCCAATGGAATCGTTGTGAACCAGAGGAGGGCCAACGCAGTGGGCTGCACCGCTCAGCCCAGGCTGTCCCCACCTTTGCATCATGTTACAGGGATTGCTGAGCATCCCCTGGCCCGCAGAGTCCGCAGTGATCCTGGAGGTGGCACCCTCAGCTTCCCCAGCTACTCCAGCAACGGGCTTTCCAACGGCATCTCCTCTCTCTCGGGCTCCCACCTGCCCGGAGTGCCCTCCGactcctctgcctcctcttcctccagctcctcgtccagctcctcctcctcatcagGCACGGGGAGGAAGGGCAGCCGGGATTGCTCTGTCTGCTTTGAGAGCGAGGTGATTGCCGCTCTGGTCCCCTGCGGCCACAACTTGTTTTGCATGGAGTGTGCCAACCGGATCTGTGAGAAGAACGAGCCCAAATGCCCGGTCTGTCACGCTGCCGTTACTCAGGCTATACGCATATTTTCATAAGATGTATCCTACTAAACAAGAAACATCAAGAACAAACTttgttatactgcattataaaGACATAacca

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15686 MEX3, RKHD; RNA-binding protein MEX3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31039 lncRNA upstream 367538 22581469 ~ 22583154 (+) True G24742
TU30991 lncRNA upstream 488140 22462124 ~ 22462552 (+) True G24701
TU30990 lncRNA upstream 489229 22460469 ~ 22461463 (+) True G24700
TU30989 lncRNA upstream 490379 22459884 ~ 22460313 (+) True G24699
TU30988 lncRNA upstream 491175 22459020 ~ 22459517 (+) True G24698
TU31113 lncRNA downstream 91 22953609 ~ 22954842 (+) True G24793
TU31123 lncRNA downstream 180300 23133818 ~ 23139437 (+) False AMCG00007585
TU31193 lncRNA downstream 329170 23282688 ~ 23285015 (+) True G24856
TU31242 lncRNA downstream 452441 23405959 ~ 23406837 (+) True G24897
TU31243 lncRNA downstream 453466 23406984 ~ 23425440 (+) True G24898
AMCG00007581 mRNA upstream 29941 22906458 ~ 22920751 (+) True AMCG00007581
AMCG00007583 mRNA upstream 71440 22857515 ~ 22879252 (+) True AMCG00007583
AMCG00007582 mRNA upstream 97897 22790893 ~ 22852795 (+) True AMCG00007582
AMCG00007577 mRNA upstream 253271 22691353 ~ 22697421 (+) True AMCG00007577
AMCG00007575 mRNA upstream 264984 22677046 ~ 22685708 (+) True AMCG00007575
AMCG00007586 mRNA downstream 163333 23116851 ~ 23132274 (+) True AMCG00007586
AMCG00007585 mRNA downstream 180293 23133811 ~ 23139521 (+) True AMCG00007585
AMCG00007589 mRNA downstream 245634 23199152 ~ 23202769 (+) True AMCG00007589
AMCG00007598 mRNA downstream 434143 23387661 ~ 23387840 (+) True AMCG00007598
AMCG00007593 mRNA downstream 468498 23422016 ~ 23431721 (+) True AMCG00007593
TU30868 other upstream 667734 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 1883909 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3894559 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 4380228 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4658354 18290108 ~ 18292338 (+) True G23724
TU31151 other downstream 235942 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1238703 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5130304 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5499491 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 6049577 29003095 ~ 29003773 (+) True AMCG00007769

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000105_00665697_00668298.mRNA True 1423 mRNA 0.59 5 CI01000105 665554 ~ 668298 (-)