RNA id: AMCG00007581


Basic Information

Item Value
RNA id AMCG00007581
length 1608
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00007581
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22906458 ~ 22920751 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGAGTATATATTGAAGTCTGCCACAATATCGACCTCCTCAGCATGTCCTCCATTCACTCCTCTGAACTTCGAAGCCAACCCAATTGTGCGTGTTGCTGTCGAGCCCAAGCATCCAAGTGAGATGCACAAGCTGGTACGAGGAATGAAGCTGTTAAACCAGGCTGACCCCTGTGCCGAGGTGCTCATACAGGAGACGGGGGAGCATGTGTTGGTGACTGCAGGAGAAGTTCATCTCCAGCGTTGCCTTGACGATCTGAGACAAAGaTTTGCCAAGATAGAAATCAGTGCATCAGAACCCATTATTCCCTTCAGAGAGACTATCATCCAACCCCCGAAAGTCGACATGGTGAATGAAGACATGGGGAAACAGCAGAAGGTCGCTGTGATACATCAAGTAAAGGAAGAGCAATCTAAGTCTTTGGAAGGTTTCCACGTTGATGCTAGTGGGTTGGTTACACTTACTACATCCAACAAACTGGCCACCATTGGAGTCAGAGCAATGCCACTACCAGAAGAGGTGACAAGGCTCCTAGAGGAGAATGGTGATCTCATCCGCACAATGGAGCAGTTCAACCTATCAGTAAAAGAGGGCAAGAAGACTCTGGAAATCAACCAGAAAACCTTGGAGTCCATCCAGCAGTTAAAACAGAAGCTGGAGTCTCTTTTACAAGGGCGGAAATGGAGGAATGCTGTGTACTGCATTTGGTCATTTGGGCCTCGGCGATATGGCCCTAATATCTTACTCAACAGACTAGATGGCTATCAGCGACCATCAGTGTGGCAGTGTCTGGATAAGGCCAAGAATGACATTGGGCTGTACAGGGATTTTGACAACAGCATCGTTAGTGGGTTTCAGCTGGCCACGCTCTCTGGGCCCATGTGTGAAGAGCCTCTTATGGGAGTGTGCTTCTCGGTGGAGAAGTGGGACATGAAGGTGCCCCATACCCTGACACACGATTCCCATCAGGACTCGGTGGGGGAGGATGCCTCGGGGGATATCGCTCAACCTGCACAGCCTGCTGCCTGTGAGGAACCTCAGGAAGCACATGTGCAACCAACATCTAATTCCAACAAACGTCGAAATGAACCGGCTGTCACTGACTGCTACGGACCATTCTCGGGTCAGATCATCGCAGCCATGAAGGAGGCCTGTCGACACGCCTTTCAAGCTAAACCTCAGAGACTCATGGCCGCGATGTACACCTGTGAAATCATGGCCACCGCAGAGGTACTAGGTCGTGTCTATGGTGTCCTGTCCAAAAGAGAAGGCCGAGTGCTGCTGGAGGAGATGAAGGAAGGCACAGACATGTTCATCATTAAGGCAGTCCTCCCAGTGGCGGAGAGCTTCGGGTTTGCAGATGACATCCGGAAACGGACAAGTGGCCTGGCCAGTCCACAGCTGATTTTCAGTCACTGggaggtgaTATCCAGTGATCCTTTCTGGGTTCCTACTACCGAAGAGGAGTACTTACACTTTGGAGAAAAGGCAGACTCTGAAAACCAGGCACACAAGTATATGAATGCTGTGCGCAAACGCAAAGGGCTCTACGTGGAGGAGAAGATCGTGGAGCACGCCGAGAAGCAGAGAACTCTTGGCAGAAAC

Function

GO: NA

KEGG:

id description
K14536 RIA1; ribosome assembly protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31039 lncRNA upstream 323304 22581469 ~ 22583154 (+) True G24742
TU30991 lncRNA upstream 443906 22462124 ~ 22462552 (+) True G24701
TU30990 lncRNA upstream 444995 22460469 ~ 22461463 (+) True G24700
TU30989 lncRNA upstream 446145 22459884 ~ 22460313 (+) True G24699
TU30988 lncRNA upstream 446941 22459020 ~ 22459517 (+) True G24698
TU31113 lncRNA downstream 32858 22953609 ~ 22954842 (+) True G24793
TU31123 lncRNA downstream 213067 23133818 ~ 23139437 (+) False AMCG00007585
TU31193 lncRNA downstream 361937 23282688 ~ 23285015 (+) True G24856
TU31242 lncRNA downstream 485208 23405959 ~ 23406837 (+) True G24897
TU31243 lncRNA downstream 486233 23406984 ~ 23425440 (+) True G24898
AMCG00007583 mRNA upstream 27206 22857515 ~ 22879252 (+) True AMCG00007583
AMCG00007582 mRNA upstream 53663 22790893 ~ 22852795 (+) True AMCG00007582
AMCG00007577 mRNA upstream 209037 22691353 ~ 22697421 (+) True AMCG00007577
AMCG00007575 mRNA upstream 220750 22677046 ~ 22685708 (+) True AMCG00007575
AMCG00007568 mRNA upstream 345691 22552690 ~ 22560767 (+) True AMCG00007568
AMCG00007580 mRNA downstream 29941 22950692 ~ 22953518 (+) True AMCG00007580
AMCG00007586 mRNA downstream 196100 23116851 ~ 23132274 (+) True AMCG00007586
AMCG00007585 mRNA downstream 213060 23133811 ~ 23139521 (+) True AMCG00007585
AMCG00007589 mRNA downstream 278401 23199152 ~ 23202769 (+) True AMCG00007589
AMCG00007598 mRNA downstream 466910 23387661 ~ 23387840 (+) True AMCG00007598
TU30868 other upstream 623500 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 1839675 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3850325 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 4335994 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4614120 18290108 ~ 18292338 (+) True G23724
TU31151 other downstream 268709 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1271470 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5163071 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5532258 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 6082344 29003095 ~ 29003773 (+) True AMCG00007769

Expression Profile