RNA id: AMCG00007582


Basic Information

Item Value
RNA id AMCG00007582
length 7321
RNA type mRNA
GC content 0.47
exon number 28
gene id AMCG00007582
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22790893 ~ 22852795 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgttttgccaCACAGACGTCCAGGATCACGCGCTCTGATGAGGAAAGGGACTCTGGGTGGGATGCCTGGGGGTCCTGGAGTGACTGTTCTCGTACCTGTGGTGGAGGGGCATCCTACTCCCTGCGGAGATGTCTGAATGGCGGGAACTGTGAAGGTAAAAATATAAGGTACAGGACATGCAGTAACATGGACTGTCCTGCAGAATCTGGTGATTTCCGCGCTCAGCAATGTTCTGCACATAATGATATCAAATACCAGGGCAGCACATATGAGTGGGTTCCGGTTTCCAATGACCCCACAGCCCCCTGTGCTCTGAAGTGCCAGGCCAGAGGAAAGAGCCTGGTAGTGGAGCTGGCACCCAAAGTACTCGATGGCACTCGATGCAAGACCGACTCCCTGGATATGTGCATCAATGGGATTTGCCAGGCCGTGGGATGTGATCGTCAACTTGGGAGCAACGCCAAGGAAGACAACTGCGGTGTCTGTGCAGGAGACGGCTCAACGTGCCGGCTCGTTAGGGGACAGACTATGTCACACGTCTCTCCGGAAGAATCAATGAAAACAGTGATCGAAGTTCCCCTTGGAAGCCGCAGTATGAGAGTTACTGCAAAAGGACCCGATTCCCTCATTATTGAGTCCCAGACACTACAAGGAGGAAAAGAGGAGCACAGTTTTGATTCTCTAGGGTCATACATAATAGAGAACACAACAGTGGAGTTCCACAAAGGTCCAGACAGGCAGACGCTGAAGGCACAAGGACCATTAGGAGCTGATTTTATCATAAAGGTGAAGTATGCTGCTCCTCGGGACACTCTGGTTCAATTCACCTTCTACCAGCCTATTAGCTATCAGTGGAGGGAGACGGACTTCTTTCCCTGCACTGTGACCTGTGGAGGAGGGTATCAGCTCAACTCGGCTGAGTGCACTGACATCCGCTCCAGTCGCGTGCTTCCAGACCATCACTGTCGTATTTATCCTGAAAATAAGAAACCCAAACCCAAGCTGAAGGAGTGCAACATGGACCCGTGCCCCGCAAGTGATGGATTCAAGGAGATCATGCCTTATGACCACTTCCAGCCTCTGCCACGCTGGGAACATAACCCCTGGACAGTGTGCTCAGTGTCCTGCGGAGGGGGGAGCCAAGAGaggagtgtgctgtgtgtggaggAGACTGTGCATGGCCAGATCTCCCAGGTGGAAGAGTGGAAATGCATGTACTCCCCCAAGCCCACACTCAAGCAGACCTGCAACGTGTTTGACTGCCCGAAGTGGGTAGCCATGGAATGGTCGCAGTGCACAGTTACCTGTGGCCGTGGCTTGCGTTACAGAGTGGTTCTGTGCATCGACCACCGAGGACAGCACACTGGGGGATGTAACTCACAGCTGAAGCCCCATATAAAAGAAGACTGTGTGGTGCCTATTGCATGCTACAAGCCTCGAGAAAAACTTCCTGTGGAAGCTAAGCTGCCCTGGTTTAAACAAGCACAGGAACTGGAGGAGCCCAGAGCTGCTTCAGAGGAGCCAACGTTTGTCCCTGAAGCTTGGAGCCCCTGCAGTGCCAGCTGTGGTCCAGGGCATCAGACCCGCCAGGTGAGGTGCAGGGTTCTGTTGTCCTTCTCCCAGACCGAGGTGGATCTGCCTGATGAGGAATGCGAGGAAGATAAGCCCTTGTCTGAGAGAGACTGTGACCATGGGCCCTGTGGGGGCAGTCAGGCTGGCAATGAGCCCTCCATCCCCCACTATGGCAGTGATCAGCCGTATGACTGGGAGTACGAGGGGTTCACCACTTGCTCTGCCTCGTGCGCAGCAGGAAAACAAGAAGCTGTTGTGGTGTGCCTCAACAAGCAGAAAAGAGAAGTGGTTAGTGATGCTCTTTGTGACGGCTCCAGTCGTCCCCCTGTGATGATTCGAATCTGCAGTACAGATCCGTGTCCCCCAAGGTGGGAGGTCACCTCGTGGACTCAGTGCTCGGCAACATGTGGGGTAGGGATCCAAACCAGGAACGTATTCTGTATGCACGTGTTATCTCTGGACCCGCAGGACACTTGCTCTCACTCTTGTGGCGGAGGAACACGATCTCGCAAGGTTCACTGTAAACAGCTGCTGTCTGATGGCGCGTTCCTGAAGCTCTCGGATGAGTTCTGTCATGGCAGCAAACCCCTGGCTCACACGTCCTGCGCTCAGTCAGACTGCCCTCCTCAACTGGCGGGTGGAGAATGGTCAAAGTGCTCCGTTAGCTGCGGGATTGGAATCCAGAGAAGGGAGCCGGCCTGTCGCAGAGTCACAGCCATGGGCCAGCAGGTCACACTAAACAGATCGCTGTGCGCCGGCCTTGCCTCGCCAGCTCTCGTCAGGACCTGCCGCATGAACGCCTGCACCAAGCAAAAGAAGGAGGTGAAACCCAAGCAGACCCAGAAGCGTGGCCCACAGATTGTCAGCCTGCACCGTGTTTATATTCAGACACGGCAGGAAAAGCGCATCCACTTCACCATCGGGGGCCGTGCCTATCTGCTGCCCAAGACCTCCGTGGTGATCAGGTGCCCCGTAAGGAGGTTCGAGAAGGCACTCATCAGGTGGGAGAAGGACGGCCATGCCCTCTCCAATGCCAAACGCCTGGGAATTACGAAGTCGGGTTCTCTGAAGATCCATAGCCTGGAGGCAAGCGATATAGGGGTGTACCGCTGTGTTGCTGGCCCTGCAATGGAAACATTCATCCTGAAGCTGATTGGGAATGACAACAGGCTGATAGAGCCACCCAAAGGGAGGAGTCTGAAAATGGAACAGAGCAGCAGATCAGTGCGAATTGACCTCAACGAGGCCAGCCGCTTGGAAGAGAAATGGAACAGAATGAGCAAGATGTGGCAGAGCTGGAGTGAAAAGAATGAGTTTTATCTGGATGACAGCCAGGCCCAAGATCAGGCTTTCCTACAGGTTCTTGGCAACTACTTAACAAGCGCGGCACAACCCAATGGCTCCCCGGAGCTACCTGAGAAACACCTGGAGGCAGCCATCCTTCAAGGCGCATATAGCCTGGACCCCAGGCAGTTCGAGGAGCTTGTGAGGAACATCAGTCAGCTGGCTGAGAATGGAGAGGTGACTGATGACCTAGCCTCACAGTTCATATACAAGCTCATGGCTGAAGTGTCCAGACCCCAGTCTACAACTGAGAAGTGGAAAGGGCCTTTGGAGGAAAATGCTTCCAAAACCAAACTTGTTGAAAAGACGCCAAATTCATCTGAGCACATCTATGACAAAGACATAGACAAGGAGTTATACAAGCAGAAAAAGCCTGTTATCATTAGGCAAAAGCAGAACCCCTTAATGACCTTCCAGAAAAGCATTAACATAAGCATTGGAAGGACTGCCTTTCTGACTAACGCCACAcggaatatatatttaatgtgttcaTCTCTCGGTGTGCCAGAGCCGAAACTTTCCTGGACAAAGGATGGATTACCATTGCATTTTTCAGAAAGTGTATCGTGGGATAGCACTGGAACACTGCACATCTCTGACCCGAGTGGGGAGGATGCTGGCGAGTATGCATGCACGGCCACAAACAACATGGGCTCCGACACGGAAGCATCGCAGCTGCAGTATGCTGAGGTGCCTGTAATCCATGCTTCCAGAAGGAATATTTCTGAGCTGGAGAGCAGGAGAGTCACAGCTGTCGTTGGGGGCAGCGTCAGCATCAGCACTGGAGCTAATGTCACACTGGAGTGTCCTATGACAGGTGTACCTCAGCCAGCCATAAACTGGCACAAGAATGAGGGCCTAATGAACAGGAATGCTTTCCTTCTCCTCAATGGATCTTTATTACTCCAGAACATTTCATTAGAAAATTATGGAACGTACTCCTGTGTGGCAGCCAATCCTCTCGGAAAATCAATTGCGTCCagctttctctctgtgtctgCCCATGGGCCCTCCATCGATCATCCAGGTCTGTCAAGAGACAGGAGCCGCAAGAGAGTGTTGATGGCATCTCGAATTGGAACCAGCATTGCTGTGAAGCCAGGGGACCTGCTACGCATAGGGTGTCCAGTTCTTCCAAACCACAGAAAAGCTATTTACTGGTATTTCCAAAACCAGACCCTGAAAGAGGCTCCGGGCCTGCAGTACAGGATGCTGGTTGGGGGGCGGGTGCTTGAGGTGAACACACTTGCTGGAAAATTTGATGGCCAGTTCAGATGCCAGACCCCCACAAACTCCCAGCCCATATTTGCCTGGGTCAATGTCCACCTTGAAGAGTACACATGGCAGCTCAGCGAGTGGACTGTGTGCACAACTACCTGTGGCAATAAGGGCACGCAGTCGAGGGCCCTTCACTGCGTCACTAAGGAGGGCGAGGCTGTTAATCAGGTGGCCTGTGCTCATCTTCCAAAGCCAGTGTCCAGCACTCAGCCTTGTAACATACAAGACTGCTTACCCAGCTGGGTCTCCACTGTGTGGTCCAAGTGTTCAACTTCCTGTGGCAGAGGCTTCAGGCAGAGACAGGTTTCCTGTCAGCAGGTGGCGGCCGATGGGGCCGTGAGGATTCTGCTGCCGACGGCCTGTGAGAGAGAGCCGCAGCCCTCGGAAAGAGAAGAGTGCCAGTCTGACACCTGCACAGAGTGGGTGTGCTCCAGTCGCTGTCTGGGCCCAGCCCTCACCGTGCAGCAGAGGCCGGTGGTGTGCCAGCATCTCAACGGTTCTGCCATCCCAGAATCCCACTGTGATGAAAGGGACAGGCCAGTGTCTGTGCGGAACTGCTCCTCTGAGCTGTGTGATGTGCAGTGGAGGGTCGGCGCTTGGAGGCCCTGCACGGCCGCTTGTGGCAGCGGCTTCCAGTCCCGCCGGGTGGATTGTGTTCACAGGAAGAACAACAAGACCCTGGCAGACCAGTACTGTGCCTGGCAGAGGCGCCCAGTCACGTGGCAGCACTGTAATGTGACTTCCTGTGGCAGGGGTGAATGCAAGGACACAACACATTACTGTGCTGTCGTAAAGCGCCTGAAGTTATGCCTCATAGATCTTTATAAGCAAAGATGCTGCGAGTCCTGCCGGGAGGTGTAGctcttttattttcagtggagGCTGCGAACACTTAAGAGACCAGGTGGATCAGAGAGAGGCAAAATTCACGAAGCCTAAACATGTGTATTATTAGAAAACTAATCTACTTTGAAATGATAAAGGACTGttcatgttattttgttgttgttgccgttgctgttgttttacaaACTGTTTGTAAAGACTTTTAAAACTATACTGGAAAAATGCTACTGTTGCACCAATGCTAAAAGGCGTTTCACTGCTTGTTGATGAAGAATTCTTCGGATGACTTCGATTGGCTCCCATTATTGGTAGCAGGactgaaagagaagagaagcaAAATGCAAGATATCCTCTGCTTCGGACACTTGTGTGACAGGGGTCGGAAATGAGGCGTGCATATGGACTGAAGAAACCTTTTCCAAGATTTAATCTCCCTGTGTGCCTCAGAAATCAATGTTCTAGAAATAGGGTTATGTAATTTTGTAGTGTTTGAAACACCTTTGTTCAGCACTTTAAAGATGATAGTACATGTACCCTTTAGTTATTCTGGACTGTACATTAAGCTGCTTTGTAAGTTTTTATTTACTccttctgtatttttcttttaaagagagGATCGGCATATATGATGCAAGTGTATGATGGCATTAGGCAGAAAAGGTTAAAGGAATGAtaacataaattacaaataacaaaGCGTAGGTCTTTATAGtaagttattttgtgtttaactaTATGTTCAAGCAGTTCACGTTTGTGCAATCTATGGTGGGCAGTAGTTACTAAATACGGTGTGGatttttatacttttctgtTGTTACACTATTTATGTATATAGAAGTGAGTTTAAAGACGTGATTAAAAGGTCATTGTCTGCTAGGCTTTCACCTAAAATGATCCTTTTAAACTACAATGAGCATTGTAAATCCCCTGTATGCACAGACGGTAAAAGATATTTGTAGAACTGTTGTTAAATTAACACTGCTTCCATTTGAACCATTTgggtttcttttattattaattggaCAATCTGGTTATGAAGGTGTTTATCAACCCACGGTAACTGCACAAGCTCCATAGagaaagcagaacaaaaaacacGAAACATGAAAGGATTGTTTCCAACCATTCAATAAGtgtacttaaaataatacagtacaatgcacACTATCCACTTTTACTATTGTTAATTTTCATCATCTGTGTGTAtgagtgaataataataaaaaaaacagatgtagaATTCAGGATTTAAGTATAGTTTTACGAAAGACCATTCACCTGCATGACAGCATGgttgtgattaaaaaataatttatcattAACATAAACAAGTTTTATGTATTCAATAATGTTATTAATCTGCAAATCAATGTgcttacatgaaaataaattaaatgtagttgTTTAATTGACAACCAAACAATTTTAAACAGCCAATAAATGTTAGCTGTCCAGTATTGGGGTAAATATCAATGTAAGAGTTTCGCCTAACATGTTCTACATTGGTATGAAACTTAACATGCAGTAACTGACAATACTTACCGAAATCTAATTTGTGTCAGTAAAGATACTTCTTTATTCTCAGTTTTGTCAGTATTAAAAGCTTTGTTGTAAAACCCTACAGAAACTGGTGTTACactgttccagtttttattataGGTAATTaatggaagaaaaatgtaaGGCACTTTAGGAAAGATACTGCAGAACTCCGTGTGTGCCTTTAGCTTCCTGAATTCTAAAATGggtcttgtttttttgtgttttttattttttattttaataatatagtgCATTGTAAAATATGACTTGTATATACTGTTTTAAAGTGCAATACTGTACATTGAGTGTAGATTTTGGGACTTTATTTTCTTACTACCAAAGTTACTGATTTAAGTGTCTTTGTAccttgtatttaatatttgagTATTATCCCCTGAATTTAGCACTTGCTAACAtgatttcttgttgtttttattatcaacTTCCTCCTGGTTTCATACGCATGTGATGCGGACATATTATTGcaatccttttaaaaaatatttgttgtcaAGAAATTTCTCCTTTCAAACATGGATGGAGTACATATACTTAACTAAACTCTCAACATTCCGATATAGCTACTGATATTTACTGTAATATGTGTAGgttgttaaataaatgacttgTACACTTAGCACCAGatttacaaaaactaaataaactgtTGGGACAAGCGACATATAAGTGTCATATGAtttcaaaaaataatcaaacacaacaatgacaattttat

Function

GO: NA

KEGG:

id description
K24429 ADAMTSL1_3; ADAMTS-like protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31039 lncRNA upstream 207739 22581469 ~ 22583154 (+) True G24742
TU30991 lncRNA upstream 328341 22462124 ~ 22462552 (+) True G24701
TU30990 lncRNA upstream 329430 22460469 ~ 22461463 (+) True G24700
TU30989 lncRNA upstream 330580 22459884 ~ 22460313 (+) True G24699
TU30988 lncRNA upstream 331376 22459020 ~ 22459517 (+) True G24698
TU31113 lncRNA downstream 100814 22953609 ~ 22954842 (+) True G24793
TU31123 lncRNA downstream 281023 23133818 ~ 23139437 (+) False AMCG00007585
TU31193 lncRNA downstream 429893 23282688 ~ 23285015 (+) True G24856
TU31242 lncRNA downstream 553164 23405959 ~ 23406837 (+) True G24897
TU31243 lncRNA downstream 554189 23406984 ~ 23425440 (+) True G24898
AMCG00007577 mRNA upstream 93472 22691353 ~ 22697421 (+) True AMCG00007577
AMCG00007575 mRNA upstream 105185 22677046 ~ 22685708 (+) True AMCG00007575
AMCG00007568 mRNA upstream 230126 22552690 ~ 22560767 (+) True AMCG00007568
AMCG00007570 mRNA upstream 241484 22536885 ~ 22549409 (+) True AMCG00007570
AMCG00007567 mRNA upstream 270606 22518496 ~ 22520287 (+) True AMCG00007567
AMCG00007583 mRNA downstream 4720 22857515 ~ 22879252 (+) True AMCG00007583
AMCG00007581 mRNA downstream 53663 22906458 ~ 22920751 (+) True AMCG00007581
AMCG00007580 mRNA downstream 97897 22950692 ~ 22953518 (+) True AMCG00007580
AMCG00007586 mRNA downstream 264056 23116851 ~ 23132274 (+) True AMCG00007586
AMCG00007585 mRNA downstream 281016 23133811 ~ 23139521 (+) True AMCG00007585
TU30868 other upstream 507935 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 1724110 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 3734760 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 4220429 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4498555 18290108 ~ 18292338 (+) True G23724
TU31151 other downstream 336665 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1339426 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 5231027 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5600214 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 6150300 29003095 ~ 29003773 (+) True AMCG00007769

Expression Profile