RNA id: AMCG00007585


Basic Information

Item Value
RNA id AMCG00007585
length 2621
RNA type mRNA
GC content 0.35
exon number 6
gene id AMCG00007585
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23133811 ~ 23139521 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAAGATCAAGGAAGCTCTTGGTTTGAAAGAAAATCTACACATATAAAAGGAAAAGGGCTGTGTTCGCATTACCGAAAGAGAaactaatagtaataaaaacatCTAAGCCTAATATCTGATCATTTACATAATCGATATACCATTTATTGCAGTTAATTCGTTACCACTACCGGAAAATATGAATAAGTAAGTTGTTtatgcaattatatttatataatataattctatttttgtatcgttttttatgattaaaatctaattatacGTACCTAATGTTTGTGCTCAGCCCTCAGTATATATTAGTATGTATGGAGGCTGAAGCATTGCGGTGGCGTTTGACCTCTGGGATTAGATTTGGTGCCTGCTGTACCATTTTAGACCAATTTAAGGGAAACATGATAAGTAagaattagtatttcacagataTCATCGAGAATTAGTCTGCTTTCTCTGGACCCATCTTTTGCAGTTAGCTGAAGCCAACAACAGGTAGTGCACTGCATTGTAATTACGCATTATATACGATGGATTATAAGCAAATAGCAAATATAGTTGCTGACAATCTGCTCAGCTACAGCAAAGATGAGAGTGGATGGAAAGTCTGCAAGAAATCGAATGAAGTGACAGTTCATTGGAGGCCATCAACTGAATTTCCAGGAAATTTATACAAAGGAGAAGGCATCATAAAAGGAAACCCAGAAAAAGTGTGGCAGTGTTTGAAACCGGTCCCGGAAGGGCTTCGAGTCAAGTGGGATAACAATGTAAAGAAGTTTGAGCTGATAGAAATGATCGATTATgatgtgtctgtctgcagaaCTGTCACTCCCTCGGCAGCTATGGGTATTATTTCTCCTCGAGACTTTGTAGATGTTGTTTTAGTTAAGCAATATGAAGATGGCACCATTACATCAAATGCTACCCATGTAGGACACCCAGGGTGCCCTCCTCAGCCGGGCTTTGTCAGAGGGTTTAACCATCACTGTGGTTGCTTTTGTGTACCCATCCCTGGGGAACCAAACAAGACCCAGCTCTTAAGTTTTTTTCAGACTGACCTTGGAGGCTTCCTCCCTCGATCTGTGGTGGATTCCTTCTTCCCCTCTAGTATGGCAGAATTTTACAGCAACCTCGCCAAAGCAGTTAAAACGCTAAAAGAAGACTGAATATTCTCTCGTCAGAATTGTGAAAATATCACACCGAGTgaccttttgtttatttcagtttcttgcAGAAAAGActgcataattatttatttttttaccataaACAGACCAGTGTCATAGATGCTACCAAATTATCTGCCTATtgtcacagaaaaataatctttttaGCAGCACAGTATTGCATAGAGTACGGAATATCACACAATAGTAATTATACATACTAATGACATTCATGTTTATGGACCATTCAGAATGTCCATAAAGGGCCCTTTTCATCTGTATCTGATGATTATCTTAATTAAGACGTGGCCGCCTTTAAACTTGCATTcctatgtaaattatattattacttgTATAACTCTGAGATGCGTGTGCATTTGAAAGGTGCATAAACCTAACGGGGAATGTTCATGTGTGCGAATGAGTGAAAGGACACATTCCATCTGACCATACGGGTGATGTTATGAAACTGGCAGGGAGAATATCTGGAACATATTGTTAACAAAGTTCCCCATTTGAAACTaccaacattttaaactttataaGCAGTTCATCATCAGAGGCCTAAGCCTTGAACTATAGAGTATGAATTATAGCTTCCTCTGACAGTAAACCATACATTTTGTCTGTCAAGTGTTACTTGTCCATTTCACACTGTGAAAACCACCTGTTTGGGCATAGCTGCTGCCCAGGTAACACTACTCAGTAAcacttgtgatttttttttgttgttgttggtattgattaatgtcattttttaattaatttagttttaaaatgtaaactatatgtgttctatagctctttaatttgttttactgctgatttaatgtcatattgttataattatatttagatGGGCCTGATTTCTAGAGTTTACtaaagaaaactgaatatttccatctgtgtttaaaatgttgcacCCTGCATAACTTTAATTGGTAATGTGAAGAgtaattttaatacatattttcaaaaagtaGGAGGTCAGTGATGAAAACTTCTACCACAGCATTATTGGGTTTGtgctacaaaaaaaatcaattagtGTTTTTAGATTTATATGTTTTAGTCTTTGTATTAACATATCACAACTAGTCTTGTATGCTGTacaagtttattatattttgaattatttgataatttattttattaaagtttgtAACAGATACTCTACTATCGTATGAGGTATGGACTCCTTGATAATTAAACCAAATGCTGCTATGAAAAACGATCACGTCAATGTAAGTTGCACTGTAGTAGTTAATAAAGGAGATATATGCGTATTGTGATTGACTGTGTgtgcaaatgaaatgtattaaatgtatttattttgtattttaatagcatgcgaattaaaaaaatgaacctCATTGTATACCTGAATATTATGTGCTTATTTGATTTACAGAACAACATTTCCAGTATTCTGCCAGCTGAATTGGTACAGTGTGTTATT

Function

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0030301 cholesterol transport biological_process
GO:0015485 cholesterol binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31113 lncRNA upstream 178969 22953609 ~ 22954842 (+) True G24793
TU31039 lncRNA upstream 550657 22581469 ~ 22583154 (+) True G24742
TU30991 lncRNA upstream 671259 22462124 ~ 22462552 (+) True G24701
TU30990 lncRNA upstream 672348 22460469 ~ 22461463 (+) True G24700
TU30989 lncRNA upstream 673498 22459884 ~ 22460313 (+) True G24699
TU31193 lncRNA downstream 143167 23282688 ~ 23285015 (+) True G24856
TU31242 lncRNA downstream 266438 23405959 ~ 23406837 (+) True G24897
TU31243 lncRNA downstream 267463 23406984 ~ 23425440 (+) True G24898
TU31292 lncRNA downstream 518637 23658158 ~ 23659898 (+) False AMCG00007604
TU31291 lncRNA downstream 527842 23667363 ~ 23670067 (+) False AMCG00007604
AMCG00007586 mRNA upstream 1537 23116851 ~ 23132274 (+) True AMCG00007586
AMCG00007580 mRNA upstream 180293 22950692 ~ 22953518 (+) True AMCG00007580
AMCG00007581 mRNA upstream 213060 22906458 ~ 22920751 (+) True AMCG00007581
AMCG00007583 mRNA upstream 254559 22857515 ~ 22879252 (+) True AMCG00007583
AMCG00007582 mRNA upstream 281016 22790893 ~ 22852795 (+) True AMCG00007582
AMCG00007589 mRNA downstream 59631 23199152 ~ 23202769 (+) True AMCG00007589
AMCG00007598 mRNA downstream 248140 23387661 ~ 23387840 (+) True AMCG00007598
AMCG00007593 mRNA downstream 282495 23422016 ~ 23431721 (+) True AMCG00007593
AMCG00007604 mRNA downstream 518329 23657850 ~ 23670079 (+) True AMCG00007604
AMCG00007605 mRNA downstream 553721 23693242 ~ 23708772 (+) True AMCG00007605
TU30868 other upstream 850853 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 2067028 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 4077678 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 4563347 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4841473 18290108 ~ 18292338 (+) True G23724
TU31151 other downstream 49939 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1052700 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 4944301 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5313488 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 5863574 29003095 ~ 29003773 (+) True AMCG00007769

Expression Profile