RNA id: AMCG00007586


Basic Information

Item Value
RNA id AMCG00007586
length 3151
RNA type mRNA
GC content 0.47
exon number 20
gene id AMCG00007586
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23116851 ~ 23132274 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACTCAGATGACGATGATAAAACTGATGAACGAGTGGAAAGCAATGACCCAGAGGAAATGTTCCAGAACATTCAAATTCAGAAGGAGATCATCGCAAATATTCGCACCAGACCTGCGCCGATGAGACACAAACTGAAAGCCCTCAAACAAGCCAGAGAGATTGTCTTGAAGTATGAAGGCAGACTGACAAGGACAAGAGGTTATCAAGCTGCTGGAGCTGATttgctGAAGAAACTATCTCGTTTGGCATATAATATAGTAGTTCTTTTCATTCCATGGGAAATGAGGATAAAGAAGATTGAGAGTCATTTCGGATCTGGTGTGgcttcttatttcatctttCTGAGGTGGCTGTTTGGTATCAATATTGTACTCACAATCATGACCGGAGCGTTCGTGATTCTGCCCGAAGGCTACCTCCAGTACTCTGTGCTGTTTTACGGCTACTATGGCAGAGTCAGGAAGATCGGAAGTGCAGGGTATCGTCTGCCCTTGGCGTACTTTTTGGTTGGGATGGCTGTTTTTGCCTACAGTTTCATCATTCTTTTAAGAAAAATGGCAAAAAACTCCAGGCTTAGTTTAGCTAGTGCTTCAGATGAGAACTACACTTTCTGCTGGCGTGTTTTCTGTGCCTGGGACTACCTGATAGGCAATCCCGAGGCTGCAGAGAGCAAAGGAGCGGCTATAGTTAACAACATCAGGGAAGCAATTCtagaagaacaagaaaagaagaaagacaaaagcTTAGCAGTAATGATAAGTCTGCGAATCCTTGCAAACATCCTTGTTCTTCTCTCGCTTGCTGGAAGCATTTATATCATCTACTTTGTTGTTGACCGCTCTCAAAAGCTTGAACAGGAGAAGCCAGAATTAACCCTGTGGGAAAAGAATGAGGTTAGTGTGGTTGTGTCTCTCATCACCATGATTGCACCCTCTGCTTTTGAACTCGTTGCCCAGCTGGAGATGTATCACCCAAGGACAATGCTACGGTTCCAGCTTGCCAGGGTTCTTGTCCTGTACCTGGGAAACCTCTACAGTTTAATCATTGCTCTGTTGGACAAGGTGAACAGCATGAGTTCAGATGAGCTTACCATCAATTCCAGCATGTCAGATTCCACTGCCTTCTTGGCCACCATTGCTCTTCCAGAAGAGGAGAACCTGTCCACTATTGTACCTGATATCTCAGAGAGGAGGAATAGCACCCTGAGTGTAGCAATCAAAGAGAACAAGACCAAGTCAATCGTATCTGTAGTGTTTAATGGGACTTATTCATATGAATACAACATGAAGTCCCAAGACCAGTGCTGGGAGACCTATGTTGGGCAGgAAATGTTAAAACTCTCCATTATAGATATGATTTTTACTGTGGCGAGTatcttattgattgatttcttccGTGGCCTTTTTGTTCGATACCTGAGTGATTGCTGGTGCTGGGATCTGGAGAGCAAGTTTCCTGAATACGGCGAATTTAAAATAGCTGAAAACGTCCTACATTTGATTTACAACCAAGGGATGATATGGATGGGTGCCTTCTTTTCCCCGTGCCTGCCAGCTTTCAACGTGCTCAAACTGATCGGCCTGATGTACCTGCGGAGCTGGGCCGTGCTGACGTGCAATGTTCCCCATCAGCAGGTCTTCAGAGCCTCCAGATCCAATAATTTCTACCTTACAATGCTTTTGTTTATGCTGTTTCTTTGTATGCTTCCAACAATTTTTGCGATTGCGAGATACAGACCGTCACAAACATGTGGACCTTTCAGcggCCAAGAAAAGATTTACGACATTATTTCTGAGACTGTTGCTACCGATTTCCCCTTGTGGTTCAGCAAAGTAATGGGTTACATCACAAGCCCTGTGGTTGTGCTTCCAGCTCTGCTACTGCTTTTCATGTTGATCTATTATCTGCAGTCTATTGCAAGATCATTAAAATTCACCAACAATCAGCTGAGAATGCAGCTTCAGACAGAGAGAACAGAAGATAAGAAGAAGGTTTTTCAGATGGCAGCAGCAAGAATTCAGGGCCAAGAAGGCAGTGATAAAAAGACAGAGCAGGAGAGCGATATAACAAGTCAGGAGTCTTCCATACGCTCCTCTTCTCCCAGACGAAATGGAAGTGTGACAAACTTTGAGTCTCCAGTGAGCAGAGGCAATAGCATCCGCACCATCACCCAGTCTGCATCTCGAACTGAAGTCAATCGGGCAGCAACTGCCTCTCAAAGCCCATCCATTCCTGtcttacaaaaacacagaatggAGCACATTCCAAACAGaaatccaGGATTTCAACAAGGTGATGCAAGTGGATCCTGCAGATTGAAGTCCTATCATCATGTGGCCTACAATCCTTCGGCCAGGTACAATGAGAATGTGCATTCAGATCCTTTATTCAGGAAGAACAACCGGCCTGGTCATCCTGACGCAATGGGAGGCGGAGGAGGTGCCCAGAGTTTCATTAGCCGCCGATCCCACACCACCCGCTATGTGATTGTCAACGAGCATGAGGCCCGGAAAAAGATGATGCGGTCCTCCAGTCGACTACCGAGACACTACAGGGTGGATGAACCAGGGGATATAGTGGAGCTGTATCCCAGGCACATCAAAAGGTACAGTGTCCGGACTCCCCAGAGGTCACATCAGTCTCACCtcagtgaagaggaagaggaagaggaagggaaGGGAGCAAGGAAGGGCTCCTTCAGCCAGACACACCGGCCCAGATCGCTGTCAGATCTACACCAGCCGGCCCGATTCTACATCGGAGACAAAGTGGACAGCCAGCTTTCCATCGCCAAAGACATGGCAAAGGGCCGCTATGGAGTGTATGAAGATGACTGCAGAGTGGAGTGGGAGGATATGACGTCTCGCTCCCGGCCCCGGACACACATCAAAAGCATTGAGCCCCCTGAGCGACACTCCGAGCCGCAGGTCAAGCCCAAACTGAAGCACAAGCTGGAACCATCCTTGACAGAATCAGACTCAGCATCCATTGCATCTAGCAGTGATCAGCAAAACAGCAGCACCGACCAGTACATTCAGGTCATCCATAACAAGGAGAAATACCTCAAGTCTAGTGGCAAGTTGACCAAAAAGAAGTCTAAGGCCAGTATCGATTTGAATGTGTCTGGATCCAATGAACTGGTTTGCTCC

Function

GO: NA

KEGG:

id description
K21988 TMC; transmembrane channel-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31113 lncRNA upstream 162009 22953609 ~ 22954842 (+) True G24793
TU31039 lncRNA upstream 533697 22581469 ~ 22583154 (+) True G24742
TU30991 lncRNA upstream 654299 22462124 ~ 22462552 (+) True G24701
TU30990 lncRNA upstream 655388 22460469 ~ 22461463 (+) True G24700
TU30989 lncRNA upstream 656538 22459884 ~ 22460313 (+) True G24699
TU31123 lncRNA downstream 1544 23133818 ~ 23139437 (+) False AMCG00007585
TU31193 lncRNA downstream 150414 23282688 ~ 23285015 (+) True G24856
TU31242 lncRNA downstream 273685 23405959 ~ 23406837 (+) True G24897
TU31243 lncRNA downstream 274710 23406984 ~ 23425440 (+) True G24898
TU31292 lncRNA downstream 525884 23658158 ~ 23659898 (+) False AMCG00007604
AMCG00007580 mRNA upstream 163333 22950692 ~ 22953518 (+) True AMCG00007580
AMCG00007581 mRNA upstream 196100 22906458 ~ 22920751 (+) True AMCG00007581
AMCG00007583 mRNA upstream 237599 22857515 ~ 22879252 (+) True AMCG00007583
AMCG00007582 mRNA upstream 264056 22790893 ~ 22852795 (+) True AMCG00007582
AMCG00007577 mRNA upstream 419430 22691353 ~ 22697421 (+) True AMCG00007577
AMCG00007585 mRNA downstream 1537 23133811 ~ 23139521 (+) True AMCG00007585
AMCG00007589 mRNA downstream 66878 23199152 ~ 23202769 (+) True AMCG00007589
AMCG00007598 mRNA downstream 255387 23387661 ~ 23387840 (+) True AMCG00007598
AMCG00007593 mRNA downstream 289742 23422016 ~ 23431721 (+) True AMCG00007593
AMCG00007604 mRNA downstream 525576 23657850 ~ 23670079 (+) True AMCG00007604
TU30868 other upstream 833893 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 2050068 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 4060718 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 4546387 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 4824513 18290108 ~ 18292338 (+) True G23724
TU31151 other downstream 57186 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 1059947 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 4951548 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5320735 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 5870821 29003095 ~ 29003773 (+) True AMCG00007769

Expression Profile