RNA id: AMCG00007587


Basic Information

Item Value
RNA id AMCG00007587
length 5930
RNA type mRNA
GC content 0.45
exon number 20
gene id AMCG00007587
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23139522 ~ 23166677 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAGAAATGCCCAATCTAAATCATTGAAACGTCCTGGCAATGAGTTCAGAAAACTCTGTGCTGAGCACAAAAAAGCCAGTTAAACTCTAATGCATAGTGCTTCGGCACCTAAACTAGAAATATTAtctcttaatgtttttatttgggaatttttaaatgaagccAGTCAAAGCTCTCACTTGCTTGAAAACATGTGCAGCAGCAGATTTGAAAAAAGATGATCAACTTTGAACGTCCCTTTCCATTAGCCGGGCAAGCCAGAGGAAATCCATCAACAGTCATGCCGCACAGCTACACCAACCACAAGAAGAAAGCTAATGGGCCGGCGAGGAGGATGGAGAGGCGCAGCACGACGGGCAAAACCAACCAGAGGTCAAAAAAGCTGGGGGTCATTTCCAGGTCCTTAATCTTGTGCAATTCCAAAACCAGCGATGATGGCTCGAGCCCCGAGGAGAAATACCCTGATGCCTCGGAAACACACAAGGAAAGTGCCCGGGAGAGATCCAGGAGAAATCCCAAGGCAGAGATTTTGTCCATGGCCGTCTCAACTGAGCAGACAGCGGCTACGGTGGCCCCTGGTCAGAGCCACCAGCGAAGGGCCGCAGGTGAAGAGAAGAAGACTATGAGGAGAACGTTTTCTTTTAAGGATTCTTCGACAGATGAAAATAAGGGTCTAGTGCAAAGTCACAGCTGTACCTCTGTTCCAGCTCCTCCTGCTACAGACAAAGAGAACCGACAGCCACTGGCCAACTGCAGTGACCAGGAACACACTGGGAAAAACACGCCTCCCCAGGAGCCCATTCTAGAGATGACTGGGGATGGGGCAGGCGAGTGTGATGCAGAGAAGGCAGACAATTatcctcaaaacaaaacatcctgtAAAAGGACACGAAGCAACTCTACAAGTGTCAATCCATACTGGATTGGAGATTTGGATGCCCTGATTATTAAAACACCTGAGATACATACGCAGAGAAATGCAGGTTTCTATGGAAACAGGAAGTCACTCTCCCAGCAGCTGGAGTTTCCTAACGGATCTGTGCAGGCTGTACCTAGGCCGTCTCGTTCATTAAGCTCAGCACACTTGGTGAATTCCAGCAGCAGTGTGCAAGCctttgtaatttgcaatattGTGCTGATGAAAGGCCAAGGCAAGGGTTTAGGCTTCAGCATTGTTGGTGGAAAGGACAGCATGTATGGGCCAATGGGAATCTATGTCAAGACCATTTTTCctggaggagcagcagcagctgatGGAAGACTGCAAGAAGGTGATGAAATACTGGAGCTAAATGGAGAGTCTCTGCACGGCTTAACCCACGATGATGCACTACATAAATTTAAACAAATCAAGAAGGGCTTGCTGACGCTGGCAGTGAGGACGAGCCTGCGCGTGGGGGCCTTGCCCAACTCGGCGGCCATTCCTCACCTGTGCCGCTCACGCTCCCTCAGCTCCAGTGCCTGTATCAGCAGAGGAAGTGCAGACATTGCAGACTACAGCTTCCTGGCCAACCCTGTGAAGCCCAAGGACAGGATCATGATGGAGATCACCCTGCATAAGGAGGTGGGTGTGGGCCTGGGGATTGGGCTATGCTGCGTACCCTCCAGCGAAGGTTGTCCTGGCATTTACATCCATACCTTGTCACCTGGCTCAGTGGCACACATGGATGGCAGACTCAGATGTGGGGATGAAATCATAGAGATAAATGAAACCGTGGTTTACAATATGACTCTGAATGAAGTATATACAGTTCTGAGTCAGTGCAATCCAGGGCCAGTTCAGGTCATCATAAGTCGACACCCTGATCCAAAGGTTTCCGAACAGCAGCTCAATGAAGCCATTGCACAAGCTGTGGAGAACAGCAAACTGAAAAAGGATAAGAGCCAGTGGAGCATGGAAGGCTTGAAGAAAATGGATCCATGTTCTCATGGAAAGCAAAAGTGTGAGAAGTGCCTTGAAAGAAGTTTTAGTCAGTTGAATAACAGGCGCATTCAGAAGGTGATGACTCGTTCGTGCAGTGACAGCACCTATAATCACTGCTCTCCCTGCAGCAGCGGCAGCTCTCCCCACGCACACCATCATTCCGACTTGAAGTCTAGAGTCCACAGTGTGGATGCTACTATGACAGCTTCCCATGGTCCCATGTCTGCGTCTGTGGCCTGGCCTGAGAACAAACCATCTCATCATCACAAAGATGACTACAATGTTCCTTATAACTGCAATACTAATAACATCAGTCAGCAAGCACCAGACCTCAGcagcaaatgcacaaaatcaTCCAAACCCaaaccacctcctcctcccagaAGGTATTTTAAACAACAGgacatttcaaatgaagagcATTTCTCAGACTCTGGGGGAACCAGCAGAGATTCACCTGTTCAACACGAAGGTTGGCGTTCTTCTAGTACCAACTGCCAGGAAGCAGGGAGTGAGCTGTCTAAGGGAACTAAAGCAGCTCAGACTAACATTGTCAGTGCAAGGGCTGCATCACTTGGCGATTCTGGACTGGTTTCTCACACAACAGACTTGTCTGTAAGAGAAGAAAGGAGACATCAAGGCATTGGTTCTCCCACAAACATCTGCACACAGAGTAAGAGGCCTGCATTGAGACGACAGACCCATGTTGATCTCTTTCTGGATCAAGTGCAGGATCCTTGGGTAAGGATTTCAGACATTACTGAGGGACAACTAAGCTCTATCACCATGAGTCAAGAAAGTGAACCTGCCCTGAATGGCTCGTCTGTATTGCAAGACAAGGATGCAACTGAAGCCACCAGCGCAGTCCCAGCCTTAAGCAAGCCTGAAGAATATCCAAATGTTAAGAAAGGTCCTCCAGTGGCACCAAAGCCAGTTTGGAATCGGAATAGCCTGAAAGGAGCAAAGGGTGGAAGGATACCTGAACCCATCAGAGCTCCAGATCAGAAAAGCTCGAATGTGAGTAAAACCTTCGGAGTGAGTTTAAGAACGACCTCCTCAAAGACAAATTTATCTAtcagacaaaaaatacattcatttgagactTTCTCCAGCCCCGAATCACCAGAGAGGGGAACCAGACGACTGGTGCCTACTTCTTCCTTGCCTTTAATGGACAAAACCCAGAGCAGAAATGAAGCAACTCCCCTGGTTAACACTGATAGTCTCGTCACCAGTAATGTCATGGATGTCAACCCACCAGATAACATCAAGTCTTCTGCTCCATCAACCCTATTAACACCCACAATTGACCAATCGGCCCATGGAAACAGCACAACGTCTGCTGCCAGTGttgaaacacaaattacaagTCAGCCTCTAGAAATCACCCCAGATAACAGCAAACCTGCAACAGATTCAGACGCTCCTGCAGAAGAGCCAGAAAATTCTTCTCCTCCAGAATCCTTCTCAATTCCAAGCACCAAGAGAGCAAGCAGCACAATAGGTGTCTCTTCAGAGAAACCCCCTGaaacagaggaagaaaatgtggTATGCAAGCTACCCAGTTTGCGAACAAGAAGCCTCCCGTTATCCCCAACCCAGTCTCCCGAGACCACAAATCTGAAGGTGTTCGATAGCGAGAGTCTTGGTAAAATTCTGTCCTTCAGTAATCAGGTATCTCATGCGTTAATGAGGTCAATGCGCTCCCTGCCGCAGTCTCCCTCCATTTGGCATGGCAATCCATGGCACCCCAGTTCTGGGACACCCCAAGATGGTACAGAAGATGACTTGGCAGGCGCCGATAAGACCCCTCTTTCTCCTGCTATTGATAGCAACCACTACGAAAAGGGATTTTCTGTCAGcCTGGCTGAGCTCAGAGAATGCACTATAGGGATGGTAGAAGAGAAGAAAGAGGAAGGCAAGAGGGAATGCTATGCGTCTCTGTCCTCCTCAGTCTCTGCACACTCAGTCATCTCCATCATCCCACCTGAAGAGATTGAAAAGATGATTGAAGAAGTAAAGGCTCTGGATGAAGAAACCTTGAAAcaATTTGAAGATATCCATGTTGTCATTTTACACAAAGAGGAAGGAACTGGCTTGGGTTTCAGCATTTCTGGAGGAATAGATCTTGAAAACAAAGTGACAGCAGTGCACAGAGTGTTCCCCAACGGGCTGGCTGCCGAGGAAGGGACTATTCAGAAAGGCGACGAGGTACTATCCATTAATGGACTGACCCTTAAAGACGTGACACACAGTGATGCTATAGCCATCCTCCGTCAGGCCAGGATGATGAAAcaggcagttgttgttgttcgCAAATCCAGTGAGAGCGAGAACAGCTCGACGGAAACCAGCGACTGCAGCTTGGTGACCAGCAGAGCAGAGAACCAGAGTGCAACAgATGATGGTGGAGAAACACTGACCATAGAGCTGGAGAAAAACACAGCAGGAGTCGGCTTCAGCTTGGAGGGAGGCAAGGGCTCGATTCATGGAGACAAGCCACTCATCATTAACAGGATTTTTAAAGGGGGATCTGCAGAACAGAGTCAGATGCAGCCAGGAGATGAACTAGTGCAGATCCAGGACAATCTTGTACAAGGACTCACTCGGTTTGAAGCCTGGACTATCATAAAGTCTCTATCAGAAGGTCCTATCAAAGCTGTTATCAAAAGAAAGAAGACAGATTCTGAGGCAAGCCAATAGAACAGCAGCTGGATGGAGATCATTTGAGGTGCGCGATTGTAGAATCAACCAACACTCCTGCAGTACTACAGTAGAGTACTGAACAGGGAAACAAAATGTGGTGTGTATTTGTATCAAGAATAGGCCAAACATTCCCACTTAAgtacttattttttgtattaagcTACAGCAGGCTGCTCAACAGGGGGCAAAATGAAAACACCTGAGCCaaaaaattatttgtaatgatgTAGAAGTAAAGGTAGAAGACCATTCTATAAGAACCTGCAGAGATTCTTCAAAGACCTTCCACATTCCAAAATGTACTTACATCATACAAGAAGTTCAAAAGTGCATCATATACAGCTCAGTCAGGAATACTGGTCTACCTTCCACATTTAACAAACGCTCAACTACTGTAATTTTTGAATGCTACAGCACTTCAATTAcagctgaaaaacacacacacagtaaagcAAATGCAACAGGATGTGCTTCCTGTATGAAGGCTACACGTTAGAAATCTGAATGTATAAtactcaaataaaaaacaatacgcttttaataatacacacacagaacaccATTCATCATTACACTGCCTGAACAATCAATTATCCAAAGACAAATTAGGTACTAAGACAGAAATCCCAGGTGTAACCAGTGTGTATACTAAGTGTTCAGCTATATTCTGCATTTCATACatcataaactaaaataaagcaaatgtaatCCAGCCAAGACGATTTCACAGCATATGCAGTAGCTCATGCCATATTTACAATTGTGCAGTAATATTCTTGTGTAAATAGTGTAAAACTGCCAAATTATTTACAgctatgttttgtttatttcagtccTGGACTGTTGTTTGGGTTCAGAGAATGAATTACACTCAAAATGACTTAATTTGCTTCCTCATTTGTGCTACAGGGAAGAGCAATGCTAGTGCAGCCAAATTCATTTTTCAGTgcaatatttttgttcattaatacataataagaGCTAGTTATACCCATATAAGATGAATAATGTTGTCCATATGCAGCATCCTTATGATGTAAAGACATTGCCCTGAAGAAACAGagtttattacatattttatattgatgcAACAATTTTACATTCAAAGAAGTACATCTAACACCCAATGACTGATGTGtacaattttcattttgattatgtTTGGGTAGAATTcatttaagaacaaaataaaaataaataaaaatggcagtGATTTCTAACCTTTCTTGTATATAACTGTTGTGTTATAACACTTTTCTTGCTGTAACTTGTATTATGCAGCATATTATACTGATATTCC

Function

GO: NA

KEGG:

id description
K22628 IL16; interleukin 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31138 lncRNA downstream 4720 23133791 ~ 23134802 (-) True G24816
TU31120 lncRNA downstream 93149 23046113 ~ 23046373 (-) True G24800
TU31117 lncRNA downstream 184678 22954085 ~ 22954844 (-) True G24797
TU31045 lncRNA downstream 563068 22564091 ~ 22576454 (-) False AMCG00007572
TU31016 lncRNA downstream 618438 22518422 ~ 22521084 (-) True G24721
TU31252 lncRNA upstream 240275 23406952 ~ 23420303 (-) True AMCG00007594
TU31257 lncRNA upstream 256936 23423613 ~ 23437517 (-) True G24905
TU31295 lncRNA upstream 496215 23662892 ~ 23663540 (-) True G24942
TU31296 lncRNA upstream 500697 23667374 ~ 23670082 (-) True G24943
TU31309 lncRNA upstream 542831 23709508 ~ 23710095 (-) True G24953
AMCG00007584 mRNA downstream 282761 22852895 ~ 22856761 (-) True AMCG00007584
AMCG00007578 mRNA downstream 431827 22697429 ~ 22707695 (-) True AMCG00007578
AMCG00007579 mRNA downstream 452087 22686236 ~ 22687435 (-) True AMCG00007579
AMCG00007576 mRNA downstream 521414 22583729 ~ 22618108 (-) True AMCG00007576
AMCG00007572 mRNA downstream 563073 22561496 ~ 22576449 (-) True AMCG00007572
AMCG00007588 mRNA upstream 2691 23169368 ~ 23173117 (-) True AMCG00007588
AMCG00007592 mRNA upstream 23506 23190183 ~ 23191247 (-) True AMCG00007592
AMCG00007590 mRNA upstream 40625 23207302 ~ 23268900 (-) True AMCG00007590
AMCG00007591 mRNA upstream 103241 23269918 ~ 23278330 (-) True AMCG00007591
AMCG00007595 mRNA upstream 118123 23284800 ~ 23304116 (-) True AMCG00007595
TU30382 other downstream 2666818 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2807711 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 3216369 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 4361884 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 5080573 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 804994 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1099147 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2097655 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 2464118 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 11702758 34869435 ~ 34869807 (-) True G26961

Expression Profile