RNA id: AMCG00007588


Basic Information

Item Value
RNA id AMCG00007588
length 972
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00007588
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23169368 ~ 23173117 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCATTAGGACTTACACCGCAAACGTGAGGATTGGAAACTGGAATGAAGATATTACTCTCCAAGAGGACACTCTTAAGGATTTCTTGGACAAGAAGGAAAAGGGGGAACTGATTGTCCAGAAAACCGGTTTCCTCAAGCAGAACATTCTGAAAAAGATTGATCTGTCAGTGACAACAGATGGTTTGGTCCACTTTGGGGATGTGGTGATGCTGGTGAACCCCGGGTCTCAGACTGACAGTCTCCACAGCCTGGACCCTCCTCGGGACCCCGCCTCCCTGAGTATCAATGCAGATGAAAGCAAGGTTGGCACCTGTTCTTCAATAGAGGGGCCGTGCGAAGTGAGTGCCAGCAGGCACCTGGCACCTTGCGGACGAAATGCCTTTGTCATCACAAGTGTTGATGGGAGCAAAGTGGGCGAGCCCCTGAAATACTATCAGTGTTTTTGTCTCAGAAGCACAAAAGGCTTTGCGGGGGCGTTATATCTGATGAGCGATCATAAAACCTTCCAAAAGTGTGCCAAGAAATCCAGACTACAGGAAGTGAGCCTGGCTGATGAGCTGTCATTCCTGACATGGTGGCAGGTGATGTATCTTGACCCTCAGGAGCGGCTTGAGAATGAAGGTCTCCCAGTACCAGTAAGTTTTGTATCATTTTCGGCTTTCCTCAGATCCTCATGTTACCTGCAGATCTGCATCACAGCAAATACAAAAGTGCTTATCAgtcacagcaaaacaaatcagTGCTTAGCTGCCCTTGGAAATTACATTCTATGGACCCCTTTTGGAAAAGAATATGAAGTCACATCTCAAACCTATCTGGATTCCCATAAGGCAGAGCGGGATGCTAATCACTGGCTTTTTGTCACTGCAAACCCTGGTGAAGAAGGGCAGACAATCACTGACAGACTGGATCCAATGGCAAATATGACATCTACACAGAACCCAGAAGTGCAAACAGATGGCATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31138 lncRNA downstream 34566 23133791 ~ 23134802 (-) True G24816
TU31120 lncRNA downstream 122995 23046113 ~ 23046373 (-) True G24800
TU31117 lncRNA downstream 214524 22954085 ~ 22954844 (-) True G24797
TU31045 lncRNA downstream 592914 22564091 ~ 22576454 (-) False AMCG00007572
TU31016 lncRNA downstream 648284 22518422 ~ 22521084 (-) True G24721
TU31252 lncRNA upstream 233835 23406952 ~ 23420303 (-) True AMCG00007594
TU31257 lncRNA upstream 250496 23423613 ~ 23437517 (-) True G24905
TU31295 lncRNA upstream 489775 23662892 ~ 23663540 (-) True G24942
TU31296 lncRNA upstream 494257 23667374 ~ 23670082 (-) True G24943
TU31309 lncRNA upstream 536391 23709508 ~ 23710095 (-) True G24953
AMCG00007587 mRNA downstream 2691 23139522 ~ 23166677 (-) True AMCG00007587
AMCG00007584 mRNA downstream 312607 22852895 ~ 22856761 (-) True AMCG00007584
AMCG00007578 mRNA downstream 461673 22697429 ~ 22707695 (-) True AMCG00007578
AMCG00007579 mRNA downstream 481933 22686236 ~ 22687435 (-) True AMCG00007579
AMCG00007576 mRNA downstream 551260 22583729 ~ 22618108 (-) True AMCG00007576
AMCG00007592 mRNA upstream 17066 23190183 ~ 23191247 (-) True AMCG00007592
AMCG00007590 mRNA upstream 34185 23207302 ~ 23268900 (-) True AMCG00007590
AMCG00007591 mRNA upstream 96801 23269918 ~ 23278330 (-) True AMCG00007591
AMCG00007595 mRNA upstream 111683 23284800 ~ 23304116 (-) True AMCG00007595
AMCG00007596 mRNA upstream 152445 23325562 ~ 23367600 (-) True AMCG00007596
TU30382 other downstream 2696664 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2837557 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 3246215 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 4391730 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 5110419 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 798554 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1092707 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2091215 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 2457678 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 11696318 34869435 ~ 34869807 (-) True G26961

Expression Profile