RNA id: AMCG00007592


Basic Information

Item Value
RNA id AMCG00007592
length 1065
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00007592
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23190183 ~ 23191247 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTAGTAGTGGCTCGGGCAAATCGACTATCGAGGGTTCTTCCAGCATTCTGAGCAGCAGCTCGCAGCAGAGGAAAAAACTCTCCTCCATTTGTGACACTTGCAAGAGTAAGATGCAGCTGGTTGCAGATTTGCTTCTGTTGTCCAGTGAGACGAGACCAGTCGTCAGTACTGAAGGCCTTTCGGCAGCTGAGACATTTGAGAAATGCAGGGACACTGTCATTGCCAGGACCAAGGAACTGTCCATCCTGACTCATGATATCCAGAGCCAGCTCAACATGGGCAAGTTCACAGAAGTGGGGGACAGGCTGCTAGAAATGGGGGACCTGGTGGTCTCTCTGACTGAGTGTTCAGCACATGCTGCTTACCTGGCTGCTGTCGAGACCCCGGGATCCCAGCCTGCTCTGCCTGGCCTAGTGGATCGATACAAAGTGACCCGGTGCCGGCACGAGGTGGAGCAGAGCTGCAGCATTCTGAGAATCACCCCTTTAGCAGACCTGACCCCCCAGCTCCTTCTCGAGGTGTCCCAGAACATCTCCAAAAACCTGAAGACCCTGACGGATGCATGCATACTGGCCAGTGATAAATCCAAGGACAAGTTTGGCAAGGAGCAGTTCAAACTTAGCGTGAAGTGCATGAGTACTAGTGCAACTGCCCTCTTGGCCTGTGTGAAGGAGGTGAAAACCTCTCCTAGTGAACTGACAAGGAACAGGTGTGTGCTATTCAGCGGACCTCTAGTGCAGTCTGTACATGCCTTGGTGGGCTTTGCTACTGAGCCTCAGTTTTTGGGCAAAGCTGCCACCATCAATCCTGACGGGAAGGCAGTGCAAACTGCTGTTCTTGGTGGGGCAATGAGTGTCGTTTCAGCTTGTGTTCTCCTGACTCAAGGCCTCAGGGATATAGCCCAACATCCAGAAAATAGCACCAAGATGCCTGACTACAGGGAGCGATTACGGAACTCGGCCTGTGCTGTCTCTGATGGATGCAACTTGCTGTCTCAGGCACTGAGGGAAAGATCTTCACCCAGGACTTTACCGCCAGTTAACTCCCATTCTGTGAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31138 lncRNA downstream 55381 23133791 ~ 23134802 (-) True G24816
TU31120 lncRNA downstream 143810 23046113 ~ 23046373 (-) True G24800
TU31117 lncRNA downstream 235339 22954085 ~ 22954844 (-) True G24797
TU31045 lncRNA downstream 613729 22564091 ~ 22576454 (-) False AMCG00007572
TU31016 lncRNA downstream 669099 22518422 ~ 22521084 (-) True G24721
TU31252 lncRNA upstream 215705 23406952 ~ 23420303 (-) True AMCG00007594
TU31257 lncRNA upstream 232366 23423613 ~ 23437517 (-) True G24905
TU31295 lncRNA upstream 471645 23662892 ~ 23663540 (-) True G24942
TU31296 lncRNA upstream 476127 23667374 ~ 23670082 (-) True G24943
TU31309 lncRNA upstream 518261 23709508 ~ 23710095 (-) True G24953
AMCG00007588 mRNA downstream 17066 23169368 ~ 23173117 (-) True AMCG00007588
AMCG00007587 mRNA downstream 23506 23139522 ~ 23166677 (-) True AMCG00007587
AMCG00007584 mRNA downstream 333422 22852895 ~ 22856761 (-) True AMCG00007584
AMCG00007578 mRNA downstream 482488 22697429 ~ 22707695 (-) True AMCG00007578
AMCG00007579 mRNA downstream 502748 22686236 ~ 22687435 (-) True AMCG00007579
AMCG00007590 mRNA upstream 16055 23207302 ~ 23268900 (-) True AMCG00007590
AMCG00007591 mRNA upstream 78671 23269918 ~ 23278330 (-) True AMCG00007591
AMCG00007595 mRNA upstream 93553 23284800 ~ 23304116 (-) True AMCG00007595
AMCG00007596 mRNA upstream 134315 23325562 ~ 23367600 (-) True AMCG00007596
AMCG00007597 mRNA upstream 205827 23397074 ~ 23405705 (-) True AMCG00007597
TU30382 other downstream 2717479 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 2858372 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 3267030 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 4412545 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 5131234 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 780424 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 1074577 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 2073085 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 2439548 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 11678188 34869435 ~ 34869807 (-) True G26961

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000105_00383976_00385040.mRNA True 2649 mRNA 0.49 1 CI01000105 382918 ~ 385566 (+)