RNA id: AMCG00007593


Basic Information

Item Value
RNA id AMCG00007593
length 1917
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00007593
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23422016 ~ 23431721 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGCCAGAAACAACCGCCAGTGTAACAGTGGCCACTGCtgcttcaaaatgtatttcaacgACAACCTGCATGCGAAAAGCAGTTATTTCCACgatgaattaaacaaacaacgttaagctctttttattttagtgtttttatttgtgcaatGTTTAACACAAGCCTGCTGTTGCGCAAGTATTGTCAATAAGTAAAGTACAGATGTCCTAGTCCAATGCAAGAACTAGGATACTGTTGATGTAGCGCAGATTCCCacagttctgcgcggctccaccaatgggattcCTGGAATTGTTcagctctgcgcagaactgcggacatctgcgctagaACAACGCGGCTCATGTCAGAGAGAGGATCCAGAAGCATGGCCGCGTTACGGGCAGCCAAACAGACGCTGCGAGGCGACATCAAGAAGAAAATCGCAGCCATAGGGGATCAGGAGAAACTCCGCCAGTCGAGAATAGTTACACAAAAGctcatACAGCATCCTAAATACCAGAGCTGCGAGAGGATCGCAGTTTTCCTGAGCATGCACGACGAGGTCCAGACTGAGGAGATCATAGAAGACATCTTCAGGAAGGGCAAGGAGTGTTTCATTCCCAAATACCAGTCCAAAAGCAGCCACATGGACATGTTGAAGCTGACCGCTGCCAAAGACATCCAGTCCCTGCCGATCACATCCTGGAACATCCGCCAGCCAGGAGATGATGAGCAAGTCGAAGAGGCCTTGTCTGCAGGAGGACTGGATTTGATTCTCATGCCTGGGCTGGGTTTTGACCGAAATGGCAACCGGCTGGGTCGTGGGAAAGGTTATTATGACACCTACCTGGAGCGCTGCATGAAGCATCCCAAAGGCAAGCCCTACACCATTGGATTAGCTTTCAAAGAGCAGATCTGCGAGGCCATCCCAGTAGGTGACAACGATATAAAAATTGATGAAATCCTGCATGCGGACCAATAAACTTCAGAATCAAAAACCAAGTACTGTTCTCCTAATTGTTCCTGGAAATCTTACAAATAAAGTGCCTTTTGTGTTATTTAGCACCACCACCCCACCCACAGAACGGTCACTGGTTATATAAGAgataaattaaactgtgcaCTTAATCTTGGTCTCAGAAAGATGACTGAGGGGGAAAGTAGCTTTAACAGAAAAGCTGGGAATCCATTCCAGAGTTGAGGAAAGGCCACTCCGAGAGTGCTAAATTTCAGGTCCTATAAAGACTTTTACATTTAGGTAATTCTCCTTGACAGTTTTTACACATAGCAGATTGCctcatatacaaatatatacaaacttgGAATGACTTCCCAGCCAGGAGTTGAATCTGTGATTAACCCACAGACAGGCAGTAATTTGGTCACGCTCCTCAGTCTGTGAAACACAAGAAACACCCGCAGCTCAAAGGCTGGACGTCATCTAGCTGTGAATCTTTTATAACATTCGCTCACTTCATCActgtaattttttaattgtattttttgccaTCATGGtttcatttctctctccctgatCCAACATCTCTACTTTTCTGGCAGTGGAGGCTGAGTCACTGAACCATAAACAGGTTTGCAGAGACTATTGTTTAAGGTAGACCGTTTCTTTTGAGTATGAGCCATGTATAATTGActtgcttgttttcatttcacttaatTATTCAAGTACAATTAAAGTTGTCCATTATAGTACAGTCAGTGAGTAAAATCTTTAATGGTCTTTGAGTGATTTCTAAAAGTGAGAGACAAAAAGACTCTGatatacaatttgaaaacaattggctttgtttaatttgcctCAATTGTTCTCCCtagatttaatttgttaaaaaaacaaatgacattaaaaaaatgcacaagtCTATTCTTTGCATATTATCTATTCATCTTCAGtaattagaaaaatgtattccaag

Function

GO: NA

KEGG:

id description
K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31242 lncRNA upstream 15179 23405959 ~ 23406837 (+) True G24897
TU31193 lncRNA upstream 137001 23282688 ~ 23285015 (+) True G24856
TU31123 lncRNA upstream 282579 23133818 ~ 23139437 (+) False AMCG00007585
TU31113 lncRNA upstream 467174 22953609 ~ 22954842 (+) True G24793
TU31039 lncRNA upstream 838862 22581469 ~ 22583154 (+) True G24742
TU31292 lncRNA downstream 226437 23658158 ~ 23659898 (+) False AMCG00007604
TU31291 lncRNA downstream 235642 23667363 ~ 23670067 (+) False AMCG00007604
TU31352 lncRNA downstream 413783 23845504 ~ 23851902 (+) True G24992
TU31358 lncRNA downstream 428961 23860682 ~ 23863793 (+) True G24997
TU31372 lncRNA downstream 490199 23921920 ~ 23923225 (+) True G25011
AMCG00007598 mRNA upstream 34176 23387661 ~ 23387840 (+) True AMCG00007598
AMCG00007589 mRNA upstream 219247 23199152 ~ 23202769 (+) True AMCG00007589
AMCG00007585 mRNA upstream 282495 23133811 ~ 23139521 (+) True AMCG00007585
AMCG00007586 mRNA upstream 289742 23116851 ~ 23132274 (+) True AMCG00007586
AMCG00007580 mRNA upstream 468498 22950692 ~ 22953518 (+) True AMCG00007580
AMCG00007604 mRNA downstream 226129 23657850 ~ 23670079 (+) True AMCG00007604
AMCG00007605 mRNA downstream 261521 23693242 ~ 23708772 (+) True AMCG00007605
AMCG00007606 mRNA downstream 281462 23713183 ~ 23759994 (+) True AMCG00007606
AMCG00007612 mRNA downstream 473482 23905203 ~ 23919949 (+) True AMCG00007612
AMCG00007614 mRNA downstream 510990 23942711 ~ 23960914 (+) True AMCG00007614
TU31151 other upstream 228495 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 1139058 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 2355233 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 4365883 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 4851552 18567769 ~ 18570464 (+) False AMCG00007433
TU31514 other downstream 760500 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 4652101 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 5021288 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 5571374 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 6334107 29765828 ~ 29775035 (+) False G26258

Expression Profile