RNA id: AMCG00007594


Basic Information

Item Value
RNA id AMCG00007594
length 1494
RNA type mRNA
GC content 0.39
exon number 6
gene id AMCG00007594
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23406928 ~ 23420303 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCTAACTGCATCAGAACAGAGGTGGGATATGGCCCAAGAGACTAACCAAACCCAGGTGCCTATGCTCTGTGCCACTGGCTGTGGATTTTATGGGAACCCGCGTACAAATGGAATGTGTTCTGTTTGTTATAAAGACTTAATGCAGAGACAGAACAGTAATGGACGAGTCAGTCCTCAAGCACCCTCTGGCATGAGCAGTATAGGAGATTCATTACCCACACAGTGCTCAGAAGGCACTACCATAGATGTCCCACCAGCAGTCTCGCCAACGGCCACAGCACTGGAACAAAGCAGTGTTGTATCCAGCCAGACTCTCTTATCACAAGCATCACTAACACATTCTGAAGAGGAAGATTCATCGGGGGACAAAATAGGGCTGAAAACAGAAGAATTACAggCTTCAGCATCTGATGACTCTGACCAAGCCTCTTCAGAAGGGCAGGACAAATCGCCTGAAAAGCccaagcaaaagaaaaaccGCTGCTTTTTGTGCCGGAAGAAAGTGGGGCTCACAGgTTTTGACTGCAGATGTGGAAACCTGTTTTGTGGCGTCCATCGATACTCTGACATTCATAATTGTACCTTTGATTACAAGGCTGATGCAGCGGAAAAAATTAGAAAAGAGAACCCCGTAGTTGTTGGAGAAAAGATTCAGAAGATTTGACCAGGCGGATTTTGTAAACACCAGCGATTTACATTGACttccccctttttattttttttggatttaattttaagtcGTTAATGGGATTTCTGAACAATTTATCATTCTTAGATTAAATCATGCATGCCATCTGGAAACTTTTTTGAAAATTCCTTTTGAAGTATTTCTTTCGAGgttatgattttatttcctgttgGACGTGATTGGTGATATCTAAGCAGACTTCAGGAGTGTTACTGTTTTATGCCGTTTTAATTTTAGGATCATACAGGACTTTCATAACAGCTAGGTGATCATACCAGAGGGCTGTGCTTTTCTGGTATctataaaaatgcatgttgtaACCTTTTGaagtcttttgtttttcctatgtATATAGCTTTTCCTCTGCAGCACGATTTCTCTTTCTAATGTGCTTTTTGAGGGCACTAATAGGTATCAATAACTGAATGTATTCTAATAATTATGGCTGCTTTTGTTctacattaacaaaaacagaaagtttcAACATATATTGGCATATTTGCTTGTTTGCCCCCAGAACTTATTTATGTCTCGAGTTATTTAGGAGAGTGTATGATGTTGAggtttaaaagtgtgtgtgtgtatgttttcttttgagtgggggggtaaaaaaagaaaagaaaaaaagagaagcctGTATGCACTTCATTGCTGGCTGTGAGTGTCATTGGGGAAAAATATAGTTCATTTATCCGAGAGTGCACAAATGAAGTATGATCTGAAAgtattgtgctgtatttatgttAGTTTATTCACTGTCTtaactttgatttaataaagttaaaaatgacaaattttATA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31138 lncRNA downstream 272126 23133791 ~ 23134802 (-) True G24816
TU31120 lncRNA downstream 360555 23046113 ~ 23046373 (-) True G24800
TU31117 lncRNA downstream 452084 22954085 ~ 22954844 (-) True G24797
TU31045 lncRNA downstream 830474 22564091 ~ 22576454 (-) False AMCG00007572
TU31016 lncRNA downstream 885844 22518422 ~ 22521084 (-) True G24721
TU31257 lncRNA upstream 8599 23423613 ~ 23437517 (-) True G24905
TU31295 lncRNA upstream 247878 23662892 ~ 23663540 (-) True G24942
TU31296 lncRNA upstream 252360 23667374 ~ 23670082 (-) True G24943
TU31309 lncRNA upstream 294494 23709508 ~ 23710095 (-) True G24953
TU31311 lncRNA upstream 298025 23713039 ~ 23713294 (-) True G24955
AMCG00007597 mRNA downstream 1223 23397074 ~ 23405705 (-) True AMCG00007597
AMCG00007596 mRNA downstream 39328 23325562 ~ 23367600 (-) True AMCG00007596
AMCG00007595 mRNA downstream 102812 23284800 ~ 23304116 (-) True AMCG00007595
AMCG00007591 mRNA downstream 128598 23269918 ~ 23278330 (-) True AMCG00007591
AMCG00007590 mRNA downstream 138028 23207302 ~ 23268900 (-) True AMCG00007590
AMCG00007599 mRNA upstream 77541 23492555 ~ 23502919 (-) True AMCG00007599
AMCG00007601 mRNA upstream 123915 23538929 ~ 23587177 (-) True AMCG00007601
AMCG00007603 mRNA upstream 188319 23603333 ~ 23621762 (-) True AMCG00007603
AMCG00007602 mRNA upstream 221428 23636442 ~ 23647409 (-) True AMCG00007602
AMCG00007600 mRNA upstream 237519 23652533 ~ 23657431 (-) True AMCG00007600
TU30382 other downstream 2934224 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 3075117 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 3483775 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 4629290 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 5347979 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 556657 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 850810 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 1849318 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 2215781 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 11454421 34869435 ~ 34869807 (-) True G26961

Expression Profile