RNA id: AMCG00007599


Basic Information

Item Value
RNA id AMCG00007599
length 2703
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00007599
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23492555 ~ 23502919 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATCCAACACCAGAGTATTCTCTCTTCCTGGTGAGGATTTTGGAAGAGCTGGACACCAAACAGAGCAGTGTTTCTTACCAGGATCTGTGTAAATCTTTATGTGCCAGATTTGACTTGGCTCACTTAGCCAAGCTCAGGAGCCTGCTGTTTTACACAGCCTGTCTGGACCCCAGTTTCCCTGCCACTTTGTTCAAAGACAAGATGAGGTGTTCAATGGATGACCAGCAATCCAAGAAAATAATGGTAGCCGCAGACATAGTTACCATGTTCAATTTAATTCAGATGAATGGTGGGGCTGCCAAAGACAAATTACCCATTGGACATCGGCCAAAATTCCATAAGAATCAATCTTTTGAGTCTTGTCGATCGGATACTGACATATGCAAGTATTCTGACTGTGAAAGAGCCTACAACTTCTTAGACGTGAGAGGACATTCCTCTTCACGGACCTCACCTTGTCCCAAACCGGAGTGCAACAACTCTCAGCATTTCATTCGCACCTCCGATCCCAATTTCCTGCTGGGGGTTAACAAGGAAATGAAATGCCGTGCAGCTTCACTTGACAAgcttcagcttctaccacagtATTCGAGCAGCAGCTCTCAGCCTTGTGAAATGCAGAGCACCTACTTTCCAATGGATATAGACAGCGAATCAACAACGGATCAGGACTCCTTGCATGTAAATTCAGGGATCAAAGAAAGTTTCATTTCCAATTCTGAGCCTTTTACAGTACACTCGTGTGTGCAGAAGAGAAATATTTTCAAGGAGGACTTCCACAACCTTGTGGCGTTTACTCCCCAGGTAATCACCACAGATTCTAAGCCAAGTGATAAACTATCTGGGGGGTATCACAGAAAGGAGTCCCACAAGCCTGCTACCTTTTTTAATCACAGTTTTGAACTGCCATACAGCAACCCATATTATGAGCCAATATGTTCACCTGCTCAAGAAAAAAGACGGGCAAAGCATGAGAGTCTGGATGATCTGCAGGCATCTACCTACTTCGGACCAACGACTGTAACAGAAAACGTGAATCCGAGAAGGTCTTCAGgaaaacataacaaacaacCAGCCTGGCCTGTCAAAAGCTTGAGTCTGAACACAGAAGAAGGACCTGATTTTGAAAGATCTTTCTTAAATGCTAAACAGCCCAAAGACAATCATCGTCACAATGGCGGCAATATGGATAAAGAACAGCACTATCAATGCCCCAAAGAGCAGACAGTGATCTCTCCTTCAGGATTTGCCATTAAATCAAATGGGTCAAAAACAAAAGAGTCAAATTCAATGTCAAGTGGCTCTGGTGTGGATAAAAGAGAAGGCGTGAAAAGGTTTAAAGACAAAAGCATTAACTGTACATCTTTCCAAGTGATGAATGTAGACACTACCTTAAGTGTGGGAACCCAAACGGACCAATCAGATCAGAGAAAGTTGAAAGACTTTTCCAATCCTAATCACACAAAGTATGTTGAAAGGCATTCCTTCAAACACTCTGATGAGGACTCTGAAGTGGTCAGCGATGACATTAGTGACATCTTTCGATTTTTGGATGACATGAGTGTCTGTGGTTCCTCTGGAGTCATTCAGTCATCATGCTACAATAGCAATGGGTCCCTCTCTCAGGTGACAAAGTCAGACGGAGATAGTTCACCTGAGCAGAGTACCGTGAAAGCAGGTAAATCTGGCAACAAGTTAGACAAACTATTTAATTCTCTAGAAAGTACGGATGATGAGCTAAAGGTCAGTGTCTGTAAGCTGGTTCTCCGGATTGGTGAGATTGAGAAAAAGCTTGAAACTCTTTCTGGGGTGCGAGATGAGATCTCCCAGGTCCTTGCAAAGCTAAACAAATTAGATGAAAAGATCCAGGAACCAGACGCAAACAGCCGGCAGATTGAACCGGATATGGCCTGTGAGCTGCATTCAGATGGCAGTGTGTCCCCAAGAGTCTTCCAGTGTCACACCACTGGGCATGCCGTCAAACTGGACAACAACACTGAGTGGTGCTGCTCAGATGCCAGTGGGAGTAACAGTGAAAGTCTGAGGGTTAAAGCCTTGAAAAAGAACTTGTTCACAAGGAGGTCCTCAAGATCACTAACTGAAGAGAACAGTGCAACCGAATCCAAAATTGCCAGTATCTCCAATTCTCCCCGAGACTGGAGAGCTATCTCCTACTCTAGCCACCCTGGGGATgaggtgaaagaaaaagacagggACAGCAAGGACAGGCACAGAAAATCCAAAGAgACAGACCGGCAGTATGAGATTCCCCAGGCACACCGGTCCTCCAAGCAGCCAAAAGATTCCTACTTGATAGAGCAAGTGTTCAGTCCTCACCCCTTCTCAACGTCGGCCAAATCACACATGAAGAGCAACCCCCTGTACACAGACATGAGACTGACAGAGATGTCAGAGGCGAAGCGGCCCCAGCCATCGTGGACAATCGAGGAATACAAAAGAAACTCAGGAGAAAAGGGCAAGCTCACAGCCTTGGACCTGCAAACTCAAGAGTCCTTAAACCCAAACAATTTAGAGTACTGGATGGAGGATATTTACACTCCTGGCTATGACTCTCTACTCAAGCGCAAAGAGGCCGAGTTCAGGAGGGCAAAGGTTTGTAAGATCGGAGCACTGATTGCAGCAGCAGCCTGCACTGTAATCTTGGTCATAGTTGTCCCGATTTGCACTATGAAATCCTAA

Function

GO: NA

KEGG:

id description
K24829 MINAR1; major intrinsically disordered Notch2-binding receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31257 lncRNA downstream 55038 23423613 ~ 23437517 (-) True G24905
TU31252 lncRNA downstream 72252 23406952 ~ 23420303 (-) True AMCG00007594
TU31138 lncRNA downstream 357753 23133791 ~ 23134802 (-) True G24816
TU31120 lncRNA downstream 446182 23046113 ~ 23046373 (-) True G24800
TU31117 lncRNA downstream 537711 22954085 ~ 22954844 (-) True G24797
TU31295 lncRNA upstream 159973 23662892 ~ 23663540 (-) True G24942
TU31296 lncRNA upstream 164455 23667374 ~ 23670082 (-) True G24943
TU31309 lncRNA upstream 206589 23709508 ~ 23710095 (-) True G24953
TU31311 lncRNA upstream 210120 23713039 ~ 23713294 (-) True G24955
TU31375 lncRNA upstream 421320 23924239 ~ 23926237 (-) True G25014
AMCG00007594 mRNA downstream 77541 23406928 ~ 23415014 (-) False AMCG00007594
AMCG00007597 mRNA downstream 86850 23397074 ~ 23405705 (-) True AMCG00007597
AMCG00007596 mRNA downstream 124955 23325562 ~ 23367600 (-) True AMCG00007596
AMCG00007595 mRNA downstream 188439 23284800 ~ 23304116 (-) True AMCG00007595
AMCG00007591 mRNA downstream 214225 23269918 ~ 23278330 (-) True AMCG00007591
AMCG00007601 mRNA upstream 36010 23538929 ~ 23587177 (-) True AMCG00007601
AMCG00007603 mRNA upstream 100414 23603333 ~ 23621762 (-) True AMCG00007603
AMCG00007602 mRNA upstream 133523 23636442 ~ 23647409 (-) True AMCG00007602
AMCG00007600 mRNA upstream 149614 23652533 ~ 23657431 (-) True AMCG00007600
AMCG00007611 mRNA upstream 269813 23772732 ~ 23781085 (-) True AMCG00007611
TU30382 other downstream 3019851 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 3160744 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 3569402 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 4714917 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 5433606 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 468752 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 762905 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 1761413 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 2127876 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 11366516 34869435 ~ 34869807 (-) True G26961

Expression Profile