RNA id: AMCG00007602


Basic Information

Item Value
RNA id AMCG00007602
length 991
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00007602
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23636442 ~ 23647409 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCTCAAGGATGTTACAGACTGTGCACGAGTGGTTCTGGTGGCACCGCATCTGGCTTCCAGTGAATTTAACCTGGGCCGACCTTGAAGACCGAGAAGGACGTGTCTATGCCAAAGTTTCAGATCTATACATTACAATACCTTACTCCATAGCTTTCCTCATCATTAGGTTCCTTTTTGAGAggTTTATAGCCCCATCAGCAGCAAAGACCCTTGGGATTAAGGATACATTAAGGCTGAAAGTGGCTGACAACCCCATCCTTGAGAAGTATTTCTGCTCACGCTCCAGGAATCCCACACAAGCTGATATTGATGGGCTTTCAAAAAAATGCAGCTGGTCTGTGAGACAGGTGGAAAGGTGGTTTAGGAGGAGACGGAACCAAGATAGACCTGGTataattaagaagttcaaggagGCAAGTTGGAGATTTGTGTTTTACCTGTCAGCATTCATTGGAGGCATAGTAGCTCTTTATGATAAACCATGGTTTTATGACACTAAGGAAGTGTGGCGTGCCTTTCCGAGACAGTATTGGTATTACATCATTGAGATGAGCTTTTACTGGTCCCTGCTGTTCAGAGTTGCCTTTGACATAAAAAGAAAGGACTTTAAGGAGCAAATCATCCACCATTTAGCAACACTTACTTTACTGGCCTTCTCCTGGTGTGCCAATTACATCCGAATTGGGACTCTGGTGATGATTCTACATGACGTCTCTGATGTTATACTAGAGTTGGCAAAGATATTTAATTATGCCAAATTGCCAGTCATCTGCAACACTCTGTTTGTACTGTTTGCCTTTGTGTTCATCGTTACCAGGCTGGTTATCTTTCCTTTTTGGCTTATCCACTGTACGTGGGTATATCCTGTGCTGGACTTTCCTCCTTTCTTTGCATATTATTTCTTCAATGTGATGCTCAtcgtcctgctgctgctgcatgtGTTCTGGGCGTATCTCATACTGCGCATGCTGAACAAATTCCTCTTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31257 lncRNA downstream 198925 23423613 ~ 23437517 (-) True G24905
TU31252 lncRNA downstream 216139 23406952 ~ 23420303 (-) True AMCG00007594
TU31138 lncRNA downstream 501640 23133791 ~ 23134802 (-) True G24816
TU31120 lncRNA downstream 590069 23046113 ~ 23046373 (-) True G24800
TU31117 lncRNA downstream 681598 22954085 ~ 22954844 (-) True G24797
TU31295 lncRNA upstream 15483 23662892 ~ 23663540 (-) True G24942
TU31296 lncRNA upstream 19965 23667374 ~ 23670082 (-) True G24943
TU31309 lncRNA upstream 62099 23709508 ~ 23710095 (-) True G24953
TU31311 lncRNA upstream 65630 23713039 ~ 23713294 (-) True G24955
TU31375 lncRNA upstream 276830 23924239 ~ 23926237 (-) True G25014
AMCG00007603 mRNA downstream 14680 23603333 ~ 23621762 (-) True AMCG00007603
AMCG00007601 mRNA downstream 49265 23538929 ~ 23587177 (-) True AMCG00007601
AMCG00007599 mRNA downstream 133523 23492555 ~ 23502919 (-) True AMCG00007599
AMCG00007594 mRNA downstream 221428 23406928 ~ 23415014 (-) False AMCG00007594
AMCG00007597 mRNA downstream 230737 23397074 ~ 23405705 (-) True AMCG00007597
AMCG00007600 mRNA upstream 5124 23652533 ~ 23657431 (-) True AMCG00007600
AMCG00007611 mRNA upstream 125323 23772732 ~ 23781085 (-) True AMCG00007611
AMCG00007607 mRNA upstream 171633 23819042 ~ 23821475 (-) True AMCG00007607
AMCG00007608 mRNA upstream 175082 23822491 ~ 23827715 (-) True AMCG00007608
AMCG00007610 mRNA upstream 183760 23831169 ~ 23834638 (-) True AMCG00007610
TU30382 other downstream 3163738 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 3304631 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 3713289 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 4858804 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 5577493 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 324262 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 618415 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 1616923 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 1983386 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 11222026 34869435 ~ 34869807 (-) True G26961

Expression Profile