RNA id: AMCG00007604


Basic Information

Item Value
RNA id AMCG00007604
length 4673
RNA type mRNA
GC content 0.38
exon number 5
gene id AMCG00007604
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23657850 ~ 23670079 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGAATTGGGGGGTTGGTTCAGTAAAGTGTATATAAATTTAAtccattattaatttacttcttTATCTATATATTATCGACAGTCTCGAAGAAAATAAGAACTTTTATGCCAGCGGCGTCTCCAAATATGGGCGCCGGTGCTTTAAATCGCTTGTTTGAAACACCAGGGAAAAACTCTGACATGTAGAGTCTTGTGCAAAAGgtttatgTATCAATTTCCTTAAAGAATGCTTGGTTGGTGCTTAAGTATGTGTAAAGCACTAAGAAAAGGCCCTTTCAGAGATCAACAAAGTTGAAACAAGTCGGCAGAAACTCTGCAGGTCTCGATGAATCTCCCTTAACGAGATGTAACAGGATGCTTCCCCATCACTGTCGAAGGAACCCCGAGCTGCAAGAGGAACTGCAGATCCAGGCTGCGGTCGCGGCAGGGGATGTCCACACTGTGCGCAAGATGCTGGAGCAGGGCTACTCCCCGAATGGCAGGGATGCCAACGGGTGGACCCTGCTTCATTTCTCAGCAGCAAGAGGCAAGGAGAGATGTGTGCGGGTCTTCCTGGAACATGGAGCTGATCCTACAGTGAAAGACTTAATCGGTGGCTTCACTGCCCTGCATTACGCAGCTATGCACGGCCGAGCACGGATTGCACGCTTGATGTTGGAGTCGGAGTACCGAAGTGACATTATCAATGCCAAGAGCAACGATGGTTGGACGCCCCTCCATGTGGCGGCCCACTATGGCAGGGACTCGTTTGTGAGACTCCTGCTGGAGTTCAAGGCCGAGGTCGATCCGCTCAGTGATAAAGGCACCACGCCGCTTCAGCTGGCCATCATCAGGGAGAGATCCAGCTGCGTGAAAATCCTCCTGGACCACAACGCCAACATCGATATCCAGAACGGCTTCCTCTTACGCTACGCCGTGATCAAAGGCAATCACTCCTATTGCCGCATGTTCCTCCAGAGGGGGGCGGACACAAACTTGGGGCGCTTGGAAGACGGGCAGACGCCGCTACACTTGTCTGCTCTCAGGGACGACGTGCTCTGTGCACAAATGCTGTACACGTACGGGGCAGACACGAACACCAGGAACTATGAGGGGCAGACACCAGTGGCTGTGTCTGTCAGCATGTCCGGGGCTAGTCGGCCTTGTCTGGATTTCCTACAAGAAGTCACAAGACAGCCAAGAAATCTGCAGGACATGTGCAGAATAAAAATCCGCCAGTGTATAGGACTTCAGAACTTAAAGCTCCTCGAAGACTTGCCAATTGCCAAGGTCATGAAAgactatttaaaacacaaatttgacAGCATCTGATCCCTGCAAACCTTGCAAGGAAAAGGACCACAGATCTGTTCCCTCAATGGAAGTATATCCTATGCAATTGCTGATTTTTCTATATGAAAGCTCAGAGCAcaggtatacatttttatataacctATAAGTCTTAGCATTgttttcgtttttgtttttccttaccccagttttacagaaaataagctTTATTAAAATTGAGTTTTGTATAAaggctttttccttttttaataaaacaaatgttatcgGTAATAATATGGGGGGGTATGGGGGGAGTTTTGGACCCTTTTTTATATGTAGCCAATgtgtaattgaattgaatgatGTGGTGTTTATTTGGCTTCTGAGTGCTGTAGTACAGTGGCAAAACATTGACTTTTTGTTGTAACCTGAGCTGCACTGAGCAATAGCCTCCTGGGACTGACACATGTATCATAACTGCTTAAtactgtcatttttatttagttttattattcattgtttaaaagtgaaacaaatcGGTATACCCTTTttgacaaatgtttttaaaaaaataaatttgatcCTAAAGGAACGTTTGCATTGGCAATGGTTGTCAATTAGCCTTTGttctaaatattacaatattgctCAACATATATAGAAAATAACCCCTAATTATAATGTTAGTTTCAATTATCTTTTCTGATTCGATTTTTCTGTGGATTTGGATTTCACTTAAACAGTTCCAGTTgatattattgaaatgttttgcatttgaatcTCTTTCGAGCCTTAATCTCCATGACAAGAACAATTGTAAGGTATTCCTTAAATACTTATGCTTAGTTAGGACAAAATCCTTCTCAGTTACAATGCATATTTCTAGTAATGCAGTTCTCAAAGATTCATATCAGTGGaggtattatttttgtattgataaacTTAAGCGATCAAATGGGTCATCAGTTTAGAATGttaccattgtttttttgttaaagctgaacatgttcatgttttaaatgaggTACAGATACTTATGTGCTGGGGTATTGAAAAAGATAATACATATGTAGATGCCCTCTTTTCTAAGGTACTTTAAGAAGAGCTGTGAATTTGTCTGAATTGAAATTATAGAAACCAGAAAATGGTTTCACATTGCCACAAGGtggatttaaatttaaaacttgCAAGTCACTGTGTTTAGTAAACCCATTATTCCAGGGAAGGTATTAAGTCTCATACAATGCAACTGTGTACAGTCTTCACTGCTGTTTgatccatttaatttatttaattgcctTTTGATAAATGAAACGTTATTGAAACTGTCGGAGACCAAGTTTGTGTTACTTGGAGAGAAAAATGCCATGGCAAggagtggttttgttttcagttcttttAAACAAACCCACACTCTTTGCTTATTGCCCCATAAATATAATAGGAAAAAGGCCATGCAAAGACTTAATCTTGGCATTAACAAGACATGGGAAATGTACACAGGAAAAACGCTgagagaaatgcatttcagtgttcagtgtagaATCGTGAAAGCATCTTGCAGTGAACCAATCGCCATGTATTGACAAAATGTTTAAAGCCGCtcgagaaaataaattaataaatacaaataatttatgtaaatatttgtgttataaatgtacagcagatatttttttaagattatttaaaaactacGATATCTTGACTATTATCAAAGTGTATGGAAAAATGTTGAAAGGTCTTGTGTTTGTTCTGATGTGGCTTGTTTAGTGTCTGTTTGCGCAATGCTGAGGGCTTTGAAGTGGTAGAAACTATTGTGTTCCAGGGCGAGTGAATGGGAATTCTTCATTTTGCTTGCAGACAGAATAGGCACAGTGAGGTGGGATTTAGGAGCCTTAGTTTTACGAGAGAACAGTATTTGCTGCATCTGAAGAGCAAAAAGGGACTGCACCTGTTCTAGAAAATATCTGCATCTAAATGACATGCCTTAAGTAGGTTATGTGTTAAGACCAAACTATAACTCAAAAAGTAACATTCTCTGAGCATTTCCTACTACActagtggtaaaaaaaaatctaattgtaTCTTTTATTTTGGCTTAATTTAactttgacttttgaaaagttTGCTATTATGTCCGTATTATgagttttgtgattttgttttagttgccAAAACTTTTTTGACTAAAAacgttacatttatttacatgaaGCTGAAAACTGTACTTGGACATCCTTTCTCTTCCTTGACAAAAGTACCTGAATGGAAtctgatttttatgtttttccagGAACTAAAACTTAGTGCAGTTTTTTGTTCTTATGGCAACAACAAACATGATTTAAACCCAATAGTTTATTTACTAATCTTTCCTTTTAATGTACTGAtgctttttattatgttattatttttctttaaaaagctcAGAAGGGGTACAGGGAATTGCGAAAGTAATTAACAAAGTtaacaaaattatgaaaatgtataaggTATTTAAAGACTTTATCAAGTCTTTAAAGACTTGACAAAATCAAAggcttttttcagttttctagCCTTGTATAAATTGTAGTTCTGACTcgaatagatttattttctaaattgtgAGGCTCCTGTTACTGAGGTATCTGACACATGAGAGCAGCCATGCCGGGATTGGTGTTCCCTAATCTAGCAGCAGTGTGTGCTAATGCAGAAGGgtgaagtgtttgtgtgttattgaagtttaatgttattttagatgAAGTGCTTCcagtaaattataaaatgtacttgGAAATCCTTTTATAAATACACTGAGTATTTTTCTTCAGATCAGCACAGCATAAATTGTCCCTGTATTTTTGGCCCATACCAGCCAAGAAAATTGTAATGAAATCCAGCTGCCTCCTCTGCTCCTATCTCTTCTAATCGtacaaatgcagtttaattgTTCCTTGCTCCACGTGTCCTGGAAATTGTGAGAATGCTGGGAATTAGGTCACCATCGTCATCTTCTGttcttttgatttttgattggagaaatacattttatctaaTGATATCGTCAGCATTGAAATGCTATGAATTGAAACTATGAAGCACTTCTGTCATATACCTTTGTATCATACGCATTGTAAATTGCCCATTCCTTTCAGCTGTTGGAATACTCACTCAATTTTGATAACATGAACAACAGTTTGAAAGACTaaaagttggaaaaaaaaaaaactaaattgtcaGTAAGAAAGGTCACAGTTCTGCTACTTCAGAAAATAGTTTATCTTGTAATTTCAGAGTCTTCCAAGCCATCAAGTGCTGAAtgtcagtttaaaacaaaaagaaagatgttGAAAACACACTGTCTGCTAATTTGTATCTGTACAAATCTGTGAATAAAAAAGGGAAGTTCTAATA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10329 ASB7; ankyrin repeat and SOCS box protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31243 lncRNA upstream 232410 23406984 ~ 23425440 (+) True G24898
TU31242 lncRNA upstream 251013 23405959 ~ 23406837 (+) True G24897
TU31193 lncRNA upstream 372835 23282688 ~ 23285015 (+) True G24856
TU31123 lncRNA upstream 518413 23133818 ~ 23139437 (+) False AMCG00007585
TU31113 lncRNA upstream 703008 22953609 ~ 22954842 (+) True G24793
TU31352 lncRNA downstream 175425 23845504 ~ 23851902 (+) True G24992
TU31358 lncRNA downstream 190603 23860682 ~ 23863793 (+) True G24997
TU31372 lncRNA downstream 251841 23921920 ~ 23923225 (+) True G25011
TU31374 lncRNA downstream 254160 23924239 ~ 23926154 (+) True G25013
TU31428 lncRNA downstream 360955 24031034 ~ 24031304 (+) True G25056
AMCG00007593 mRNA upstream 226129 23422016 ~ 23431721 (+) True AMCG00007593
AMCG00007598 mRNA upstream 270010 23387661 ~ 23387840 (+) True AMCG00007598
AMCG00007589 mRNA upstream 455081 23199152 ~ 23202769 (+) True AMCG00007589
AMCG00007585 mRNA upstream 518329 23133811 ~ 23139521 (+) True AMCG00007585
AMCG00007586 mRNA upstream 525576 23116851 ~ 23132274 (+) True AMCG00007586
AMCG00007605 mRNA downstream 23163 23693242 ~ 23708772 (+) True AMCG00007605
AMCG00007606 mRNA downstream 43104 23713183 ~ 23759994 (+) True AMCG00007606
AMCG00007612 mRNA downstream 235124 23905203 ~ 23919949 (+) True AMCG00007612
AMCG00007614 mRNA downstream 272632 23942711 ~ 23960914 (+) True AMCG00007614
AMCG00007613 mRNA downstream 299762 23969841 ~ 23977600 (+) True AMCG00007613
TU31151 other upstream 464329 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 1374892 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 2591067 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 4601717 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 5087386 18567769 ~ 18570464 (+) False AMCG00007433
TU31514 other downstream 522142 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 4413743 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 4782930 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 5333016 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 6095749 29765828 ~ 29775035 (+) False G26258

Expression Profile