RNA id: AMCG00007611


Basic Information

Item Value
RNA id AMCG00007611
length 1581
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00007611
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23772732 ~ 23781085 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAAGGTTTTTGATTCAGCAGGCTACATCCGTGACCTGCACAACATCAAGATCCACCGTGCCATCACTCTCCACCCCAACAAGAACCCTCCCTACCAATACCGTCTGCACAGCTACCTGCTGAGCCGCAAGATCGCCGAGCTGCGCCACCGCACCATCCAGCTGCACCGCGAGATTGTGCAGATGAGTCGCTACGGCAACACTGAGGTACACAAGGAGGACATGCAATTGGGCATCCCCCCGTCCTTCATGAGGTTCCACCCACATCTGCGAGAGGAAGTCCTGGAGTGGGAGTTCATCACAGGGAAGTACATCTTCACTGCAGTGGACAGCCAGCCTCCCAGAAGGGGAATGGACTCCTCTCAGAAGATTTCTCTGGATGACATCATCATGCAGGTAATGGAGATGATCAACGCCAATGCCAAGACAAGGGGTCGTGTCATTGACTTTAAGGAGATCCAGTATGGCTACCGCAGGGTAAACCCCATGTATGGGGCAGAGTATGTCCTGGACCTGCTCCTGCTGTACAAGAAGCACAAGGGGAAGGCGATGACTGTTCCTGTGAGGAGACATGCTTACTTGCAGCAGACTTTCAGTGCTATCCAGTTTATGGAAGCTGAGGAGCTAGATGCCAAAGATTTGGCCAGCAGGATCAACCAAGACACTGGCTCCCTCTCCTTCCTGTCCAACTCCCTCAAGATGTTTGTTCCTTTCCAGCTCAGCATGTCCAACTTGGAATCCAAGGAGcccaaagagaagaaaataaatattttggtcCCTCTATCAGGCCGTTATGAAATCTTTGTGAGATTCATGGCGAACATTGAGAAAATTTGCCTTATCCCGAATCAGAATGTTAAACTGCTGGTCTTGCTGTTCAGCACAGACAACAATACCGAAAGAGTCAAACAGATCGAGCTGATGAGAGAATATCATATAAAGTACCCGAAGGCTGAGATGGAGATCATGCCAGTGTCGGGCCCCTTCTCTCGTGCGCTGGCCCTGCATATAGGCTCCTCCCACTTCACCAATGATTCTCTGCTTTTCTACTGTGACGTTGACTTACTGTTTACTGCTGACTTCTTGAAGAGGTGTAGGAGCAATACAATATTGGGAGAACAAACGTACTTTCCAATAATCTTTAGCCAGTACGATCCAAAGGTTGTTTATGCTGGGAAGGTTCCAAGTGACAACCATTACGTGTTCACTACCAAAACTGGGTTGTGGAGACATTATGGTTTCGGAattgtctgtgtgtataaagAGGACCTGGTTCGATCTGGGGGCTTTGATGTCTCCATCCAGGGATGGGGATTAGAAGATGTGGACCTTTTTAACAAATTTGTCCAAGCAGGAATTACACCTTTTAGAAGCACAGACAATGGCATAGTGCATGTTCATCACCCAGTCGTATGCGACCCTAATCTGGATCcaaaacagtacaaaatgtGTTTGGGCTCGAAAGCTTCATCGCATGGGTCAGCACAGCAGCTGGCTGAAGTGTGGCTGGAGAAAAACGAGCCTAGCTTCCGGAGAATCggcaataataacaacaatggaTCAATGAGGACAGCATAA

Function

GO:

id name namespace
GO:0060876 semicircular canal formation biological_process
GO:0050650 chondroitin sulfate proteoglycan biosynthetic process biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0003007 heart morphogenesis biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0033339 pectoral fin development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K13499 CHSY; chondroitin sulfate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31311 lncRNA downstream 59438 23713039 ~ 23713294 (-) True G24955
TU31309 lncRNA downstream 62637 23709508 ~ 23710095 (-) True G24953
TU31296 lncRNA downstream 102650 23667374 ~ 23670082 (-) True G24943
TU31295 lncRNA downstream 109192 23662892 ~ 23663540 (-) True G24942
TU31257 lncRNA downstream 335215 23423613 ~ 23437517 (-) True G24905
TU31375 lncRNA upstream 143154 23924239 ~ 23926237 (-) True G25014
TU31383 lncRNA upstream 173336 23954421 ~ 23955412 (-) True G25019
TU31385 lncRNA upstream 176895 23957980 ~ 23958182 (-) True G25021
TU31388 lncRNA upstream 177391 23958476 ~ 23960843 (-) True G25024
TU31433 lncRNA upstream 249950 24031035 ~ 24031304 (-) True G25058
AMCG00007600 mRNA downstream 115301 23652533 ~ 23657431 (-) True AMCG00007600
AMCG00007602 mRNA downstream 125323 23636442 ~ 23647409 (-) True AMCG00007602
AMCG00007603 mRNA downstream 150970 23603333 ~ 23621762 (-) True AMCG00007603
AMCG00007601 mRNA downstream 185555 23538929 ~ 23587177 (-) True AMCG00007601
AMCG00007599 mRNA downstream 269813 23492555 ~ 23502919 (-) True AMCG00007599
AMCG00007607 mRNA upstream 37957 23819042 ~ 23821475 (-) True AMCG00007607
AMCG00007608 mRNA upstream 41406 23822491 ~ 23827715 (-) True AMCG00007608
AMCG00007610 mRNA upstream 50084 23831169 ~ 23834638 (-) True AMCG00007610
AMCG00007609 mRNA upstream 64507 23845592 ~ 23886667 (-) True AMCG00007609
AMCG00007615 mRNA upstream 180882 23961967 ~ 23966643 (-) True AMCG00007615
TU30382 other downstream 3300028 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 3440921 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 3849579 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 4995094 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 5713783 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 190586 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 484739 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 1483247 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 1849710 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 11088350 34869435 ~ 34869807 (-) True G26961

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000343_01384210_01460043.mRNA True 2397 mRNA 0.55 3 CI01000343 1384210 ~ 1460043 (+)