RNA id: AMCG00007615


Basic Information

Item Value
RNA id AMCG00007615
length 540
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00007615
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23961967 ~ 23966643 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAGATCAGAGTTTCTCCTGATTACAACTGGTTTAGGAGCACGGTTCCATTTAAAAGGATCATAGTAGATGATGATGACAGTAAGGTGTGGTCACTGTATGATGCAGGACCAAAGAACATCAGGTGTCCAATCATATTCCTACCCCCGGTCAGCGGcacagcagatgttttttttcagcaggTTCTGGCACTGACAGGCTGGGGCTACAGGGTGGTCTCTGTTCAGTATCCAGTATACTGGGATCTTTTGGAATTTTGCGATGGATTCCGGAAGCTGCTGGACCACTTACAGCTGGATAagCTGGAGAGCCTGAGCCAGAGTGAACTGGCCTCACGGCTGACGTTGAACTGCCAGAATTCCTACGTGGAGCCTCATAAAATAAAGGACATCGCAGTGACCATTGTTGATATCCATTTGCTCCAGTTCCATGGCACAAGGTATGCAGCTATTGATCCGGCCATGGTGAGTGCAGAGGAGCTAGAGGTCCAGAAGAGCAATCTGAGCAATGCCCGGGACAGCGATGAAGACAAATAG

Function

GO:

id name namespace
GO:0030140 trans-Golgi network transport vesicle cellular_component
GO:0005829 cytosol cellular_component
GO:0042609 CD4 receptor binding molecular_function

KEGG:

id description
K19367 SPG21; maspardin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31388 lncRNA downstream 1124 23958476 ~ 23960843 (-) True G25024
TU31385 lncRNA downstream 3785 23957980 ~ 23958182 (-) True G25021
TU31383 lncRNA downstream 6555 23954421 ~ 23955412 (-) True G25019
TU31375 lncRNA downstream 35730 23924239 ~ 23926237 (-) True G25014
TU31311 lncRNA downstream 248673 23713039 ~ 23713294 (-) True G24955
TU31433 lncRNA upstream 64392 24031035 ~ 24031304 (-) True G25058
TU31450 lncRNA upstream 81017 24047660 ~ 24048480 (-) True G25075
TU31451 lncRNA upstream 82581 24049224 ~ 24049437 (-) True G25076
TU31452 lncRNA upstream 82910 24049553 ~ 24049784 (-) True G25077
TU31453 lncRNA upstream 83172 24049815 ~ 24050073 (-) True G25078
AMCG00007609 mRNA downstream 75300 23845592 ~ 23886667 (-) True AMCG00007609
AMCG00007610 mRNA downstream 127329 23831169 ~ 23834638 (-) True AMCG00007610
AMCG00007608 mRNA downstream 134252 23822491 ~ 23827715 (-) True AMCG00007608
AMCG00007607 mRNA downstream 140492 23819042 ~ 23821475 (-) True AMCG00007607
AMCG00007611 mRNA downstream 180882 23772732 ~ 23781085 (-) True AMCG00007611
AMCG00007628 mRNA upstream 30285 23996928 ~ 23997392 (-) True AMCG00007628
AMCG00007623 mRNA upstream 38196 24004839 ~ 24011628 (-) True AMCG00007623
AMCG00007627 mRNA upstream 50822 24017465 ~ 24021945 (-) True AMCG00007627
AMCG00007626 mRNA upstream 55910 24022553 ~ 24030570 (-) True AMCG00007626
AMCG00007624 mRNA upstream 65910 24032553 ~ 24045372 (-) True AMCG00007624
TU30382 other downstream 3489263 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 3630156 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 4038814 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 5184329 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 5903018 18055470 ~ 18058949 (-) True G23661
TU31390 other upstream 5028 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 299181 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 1297689 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 1664152 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 10902792 34869435 ~ 34869807 (-) True G26961

Expression Profile