RNA id: AMCG00007619


Basic Information

Item Value
RNA id AMCG00007619
length 3330
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00007619
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23997437 ~ 24007310 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGGGCTTGCAGCCGGCCGAGGGAGGCGAGAGACGGAGCATGTCCTCAATGTTTGGAAAAGCAAGAACCTGTAATGTGGTTAATGTTTGCACTGTTGCGGACCGGGGTCAACCTGAGTGCAATATCGCTATATTGGGCATTACAGGGTCAGGAAAGTcggCCCTCACAGTGAAGTTTCTCACTAAGCGCTTCATCAGTGAATACGACCCCAATCTTGAAGATACTTACACTTCTGAAGAAATTGTGGACCAACAGCCCGTTCTGGTGAAAGTCATGGATACAGCCGATCAGaaagagaaaaacaataaacaacagtCAAAGCCAAACATTGACAACCGCAGGAGCTTCGAGGGCTGTCAGCAGTACCTGGACACTGTGAGTCTGCACGGCAAGGGGCTGCAGCCAGAGACGCCCACCATCCTGCTGGGCAACAAACTGGACATGGAGAGATACAGACAAGTGAGCAAGTCTGATGGCGTGTCCCTGGCATCACGCTACAGCTGTATGTTCTTTGAGGTGTCGGCCTGCATGGACTTCCCCTCGGTGCAGCGCGTGTTCCATGAGGCGGTGAGGGAGGCGCGACGCGAAGCGGAGAGGAGCCTGCCCGTGCGGCCGCTCTTCATCAGCGAGGAGAAATCCCTGCTCAGCCTGGCCTCCGCCCCGCCCATCGCCCCTGGATACAAGGAGCTGCCCTCCCTCGCCACTGCCAAGGTGGTCACCGTCAAGTCCTCCCGTGCCCAAAGCAAGCGCCGCGCCCCCACGCTGACCCTGCTCAAGGGCTTCAAAATCTTctaaccccaccccaccccacccaacCTCACTCCCCTCCCGGGCTGCTTTCATCTAAAGTGGACCGCATCCACAACTGCCTTCCATTACCAGGGGAGCTGGTCGCTCACTTTGCTTGAGCATGGTGCTGATAACTCCAGTTTGATCCTCATTTGGATTGGTGCCCAGTCCTGTTCTCTTCCTTGGTTGCTGAAACCCTGGCATCGATGCATCGCTTTATGAGGTCATATTTGCATGTGCCTTAACAGCTATGAAAGTGCCTTCACTCAGCCACGTGGGGGCTGCAGCAGCACAACTCTCTTTATATACTGTGACGTGGAAGAGAATGGCGTGCCACACAGAAGTAGATCATTGATACTCCAGTCACATACACACCCGGCTAAGCTACGCAAGCCCTGAACACAGTGGGATGCTTTTAAATTGCTTCTTTTAATTGTCATAGGAACATACTATGCCTTATATTCCATCGCATAAGCCCTGGATTGAAATTTCAAGGTGACAAGAGGAATGCTCTTCATCCAGTTCCCTTACGGACACAGCAAAATCACTACAGAGTCTGGACGAATGGGCATCAATGCAGACTGGAGTCCCCTCTTGCCCCGTAAGCACAGGGGACAGTAATGGGGACAGCACGGGGACTACAGGTGGAGAAGACTCTGTGGAGGTCTGGATCACTGACAGCAGTACTTAAACTGAATGAAGTTCACACCACAGATGTAAAGAGGAGAGGGGGGAGATGTTGTTGGGAtttggggatttttattttttggtaagaATGAGCCTACCAATAAGAACAGTGTGAGATCCTCTGGGTTAAAGAATCAGGCTGGCCAGACTAGTTGTCGCTGGTAAGTGGCCATGCCTCCATTGATTCAACAAGACTACTGATCTGATCTAAATGCAAACAATTGGGTTTTTACATACAGTCTTGTGAGGGGCTGCATTATGTTAAATGGACTCTCTGCTCAAAGAGCCTGTCTAAAATGATGGTTACAGGGAcaagattacattttcagttgtcTGACTAATTGAACAACACGTGACTCCCCTCTAGAGTCTGACTGGTGTAAGTGCAGGGTTTTAGTGAGTGTATTAATAGGCTAGGTTGAGGAAGGGGATTGGGTTAGGGTAGTGAAGATTGGGTTCGATTTGCTTTGGTCTAGTGTAAGGGTTAGGTCCATGGATCCTATAGTAAAAGGTGAAAGGCATGCTGACACTTCAGAAGTAGACAGCAAAGGTCAGAATTAATGTTAAGGTTAAGTTATGTGCTAGCTATTGATAAGAGTGTAAATGTGATTAAACCCAGCTACTTTGACAGGTAGTTTTTATAAACCTAGACACCAAAAGTCAGATGACAGTACATGTATCCCAGTGAAACATTTTCTACAATACAACAACAACCTTGTTAGTTTTATGCAGAGGGAATACAAGCATACGTATGATTGTCATGATAGACTGTTTTATGATCCCTGAAATGACTGAGACACAGTTAAAAACACGTACCGTAAGGCATGTACCATACAGAACTGCTTAAAGCAGATGAGTAAAAAATAAACGAGTCAAAGTAGGAGAGCAGTTTTCTATATGTGTAAAAAATTCTTACACAGAacaagttttaaattaaaagctttgcAGTGAGATGTTAAGCCACTGTGTCCGTTTGTGATTATGATACCTTGTTTGCTTCTTGTAATAAATCTCAGTGTGGCCAAGCACAGATGTGAAGCCATTGGCTTGGTGGTCCTCTTATCTCCAGCTCTTTGATTTTCTCATGTCCACTCCTGATGGATTACAATAAATCTGGAGTGTGTGGTCAGATACTTTCAACACTGTGGGAATGTATGCAGAGGTAAACCCAGCATTCCTGGGGCAGAGAATGAGAAATGCAATCCACCACCTCCACTAGCCTGCGTGTATGAAAACCTCACCCATGTACTGTATGACTGTACCCCTGAATACACATAGAGTCTGTAGGGCATAACAAAAGACATGTATATAAACAGGACAAGATCAACAGGGGTAGATTGCTTTCGATATTTCACTCAAGTACAGTATGCAGTAGTTACTTCAAACTACAAAGCAACGGCACCCATACCAGCATTTGAATATGAAAGtgttggaaatatataatttgtttcttaattgtatcttttgtattgtcttttatatattttttttctcgaAAAGGTGAATAAATTTAAATTCAGAAATGTCCTACTGGTGGGCTGTTGTTGTCATGTGATGATGTCATGTGTCTGCCCCATCCCGTGTGATGAAGAAGCGGGACATCCTGTCCAGCAGCCAATGCACAGGGAAAATAGGGAAAGTGTAGGGAGAGGGTAGTACAAATCAGCAGAACCTGATGTTAAGTAAAACAGAGGTGGGGAAAAGAGTAGGTGGCACTTTTCTTGGATATTGCTATAAGTGTGGATGGTACATGCTGGAGGTTGAGACTCTTGAGTGCTGATGAAACTGCACTGTCACATGGGATGTAAAAGAATCATCATCAGTgagttgtctctctctctctctctctct

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07854 RASL12, RIS; Ras-like protein family member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31374 lncRNA upstream 71283 23924239 ~ 23926154 (+) True G25013
TU31372 lncRNA upstream 74212 23921920 ~ 23923225 (+) True G25011
TU31358 lncRNA upstream 133644 23860682 ~ 23863793 (+) True G24997
TU31352 lncRNA upstream 145535 23845504 ~ 23851902 (+) True G24992
TU31291 lncRNA upstream 327370 23667363 ~ 23670067 (+) False AMCG00007604
TU31428 lncRNA downstream 23724 24031034 ~ 24031304 (+) True G25056
TU31444 lncRNA downstream 37679 24044989 ~ 24046609 (+) True G25069
TU31459 lncRNA downstream 78097 24085407 ~ 24087304 (+) True G25084
TU31480 lncRNA downstream 143033 24150343 ~ 24153848 (+) True G25103
TU31520 lncRNA downstream 204372 24211682 ~ 24213444 (+) True G25134
AMCG00007616 mRNA upstream 2772 23987746 ~ 23994665 (+) True AMCG00007616
AMCG00007617 mRNA upstream 11669 23979414 ~ 23985768 (+) True AMCG00007617
AMCG00007613 mRNA upstream 19837 23969841 ~ 23977600 (+) True AMCG00007613
AMCG00007614 mRNA upstream 36523 23942711 ~ 23960914 (+) True AMCG00007614
AMCG00007612 mRNA upstream 77488 23905203 ~ 23919949 (+) True AMCG00007612
AMCG00007621 mRNA downstream 6020 24013330 ~ 24016613 (+) True AMCG00007621
AMCG00007620 mRNA downstream 34596 24041906 ~ 24044401 (+) True AMCG00007620
AMCG00007618 mRNA downstream 40924 24048234 ~ 24051827 (+) True AMCG00007618
AMCG00007622 mRNA downstream 48886 24056196 ~ 24077348 (+) True AMCG00007622
AMCG00007631 mRNA downstream 184982 24192292 ~ 24194481 (+) False AMCG00007631
TU31151 other upstream 803916 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 1714479 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 2930654 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 4941304 19051342 ~ 19056133 (+) True G23893
TU29768 other upstream 5426973 18567769 ~ 18570464 (+) False AMCG00007433
TU31514 other downstream 184911 24192221 ~ 24194481 (+) True AMCG00007631
TU32400 other downstream 4076512 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 4445699 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4995785 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5758518 29765828 ~ 29775035 (+) False G26258

Expression Profile