RNA id: AMCG00007625


Basic Information

Item Value
RNA id AMCG00007625
length 616
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00007625
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24052472 ~ 24055090 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCAGAAGGCGATGTAGATTTGGACCTAGAAGCCGAGGAGAACTGTACGGGAAAACCGGCAGAAAAACCTCGCAAACATGACAGCGGAGCGGCAGACCTGGAGCGAGTCACCGACTATGCAGAGGAGAAGGAAATTTCCAGCTCCGATCTGGAAACGATGGGCGAGATGGAGATCCCCCGCGGCGTGGCGGAGCGCAGTTTGAGGGAGCACATGGGCAATGTGGTGGAGGCACTGATTGCCCTGACCAACTAACTCAACGGTGCAAACACACCCGCCCACTGCCAGGACCACAGCAGCGGCCCGGACAGCCTGTAGGCTTCAAAATATCAGTGTAAACCTGAGCAAAGGACTGCTTTTCCTTTCCAGCGCAGCAACTTTTGGACCACAGGGATTCGATTCTAAATGCCTGGCTTATGGACatacatttctttgtattttaagaacagaaataaaaaatgtcattggaatattttttcccccctcctccaaCTGGTCAGATGGATTTgtcattgctttttaaaaagtaccaTGTTATGTTGTAGACTTGTTGCAGTTGCTTTCGATTACCCCCCAGCTCACAACTAATAAATACACCATATACTACTCTACA

Function

GO:

id name namespace
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0016859 cis-trans isomerase activity molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31454 lncRNA downstream 2036 24050148 ~ 24050436 (-) True G25079
TU31453 lncRNA downstream 2399 24049815 ~ 24050073 (-) True G25078
TU31452 lncRNA downstream 2688 24049553 ~ 24049784 (-) True G25077
TU31451 lncRNA downstream 3035 24049224 ~ 24049437 (-) True G25076
TU31450 lncRNA downstream 3992 24047660 ~ 24048480 (-) True G25075
TU31569 lncRNA upstream 292009 24347099 ~ 24347419 (-) True G25175
TU31570 lncRNA upstream 294940 24350030 ~ 24354310 (-) True G25176
TU31571 lncRNA upstream 313079 24368169 ~ 24368373 (-) True G25177
TU31655 lncRNA upstream 377990 24433080 ~ 24507819 (-) True G25239
TU31671 lncRNA upstream 443275 24498365 ~ 24542158 (-) True G25248
AMCG00007624 mRNA downstream 7100 24032553 ~ 24045372 (-) True AMCG00007624
AMCG00007626 mRNA downstream 21902 24022553 ~ 24030570 (-) True AMCG00007626
AMCG00007627 mRNA downstream 30527 24017465 ~ 24021945 (-) True AMCG00007627
AMCG00007623 mRNA downstream 40844 24004839 ~ 24011628 (-) True AMCG00007623
AMCG00007628 mRNA downstream 55080 23996928 ~ 23997392 (-) True AMCG00007628
AMCG00007629 mRNA upstream 23062 24078152 ~ 24100673 (-) True AMCG00007629
AMCG00007630 mRNA upstream 59465 24114555 ~ 24148021 (-) True AMCG00007630
AMCG00007635 mRNA upstream 95254 24150344 ~ 24186890 (-) True AMCG00007635
AMCG00007634 mRNA upstream 196376 24251466 ~ 24256041 (-) True AMCG00007634
AMCG00007637 mRNA upstream 207600 24262690 ~ 24281564 (-) True AMCG00007637
TU31390 other downstream 79807 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 3579768 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 3720661 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 4129319 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 5274834 18776360 ~ 18777638 (-) True G23838
TU31562 other upstream 210734 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 1209242 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 1575705 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 10814345 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 13184999 37240089 ~ 37242983 (-) False AMCG00007929

Expression Profile