RNA id: AMCG00007629


Basic Information

Item Value
RNA id AMCG00007629
length 4530
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00007629
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24078152 ~ 24100673 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGGGGCTGCAGGAGACGCCTCTCCCATGACATCTCAGGGCGCACATTTCATTCAAAAGTTGGCAAACTTTCTAAAACAACACTATCCAGGTGACTTCCTTTTTATAATATAAGTATATCCCTTTTGCTTAACGTTAGTTGCCTCACCTGGAAGAGAAAGCGGTGGGGATAAGTGGACCCAATAAGTCatatttgcagaaaacaaagtaatgaaGGCATAGGCGGAAAAGACTGGGGCGAGGAAGCCGACCTGCACACCTGCACTGACAGACCTGCGTGATGCGGGAAGCGGCCTGCGCTGGACCCGGACTCCCGCGTCGGTCTGCACAGAGTAGAGGCGGCGGGTCCCGGCGCGCAGCGGCGCAGAGCTGCGGGGAAATGGAAACACATTGCGCTGTCAGCAGCCCTGCCCCCGCCCAGGTGGAAACACAGAGCCCGGCTTGAATTGCTCAACCAAAGGTTAACTTTGAACTTCCAAGGACAGTGCGGACGAAAATAAAGTTGAATGAACCACAGAACCTCATGGACAAGGAGGTGAATTTGAAAGCACCTTTGAAAATGTAGGTTTTAGTGTCTTCTTGTTCATTTACAGGCAACATTCCCTCATTGAAGCGGCATCTCCAGACACACTGAAAAGAAGAGAACACTGACTTTGAATATCATTTTAAGGATACCAAGAAGCTTTTGGAAAGTATTAGACTATATGTTGTTGAAATAGCAACAAAGAAGGGACGCTCTTCCACTCCTtgctaaattacttttttttcttttaatgcatcACACTTGCATGACGAAGAAGCCACAGTATCCTGTGTAGACGCTCACCTCTACACGTGTAGTTTTCATAATCCTGCACCTGGTACTATTTTGTGGAAAAAAGGGAAGAGAGTTAAGTAGAGATCTGTCTGGGCTCGTTTTCGATACAGTGATGTGGcgtgcggagagagagagaaaaaggaaatacagtatttgaagaaaaatgattaaacagTAATTATACCCTAGCCAGCGCTCGGAAGGCTCGGAGGTCTTCTCCAGGACCCTGGTGAGATACCTTACAGGCGCCAGGGGTTTGTCAAGGGAAAAAAACTGCACCCATCTCCCGCCCCccagtttttatttactgtatcaTTCCTGGAGAGTATTTGAAACCAGTAAACAAAGGATTTCCTTAGTTCAGGGGTTACAATGGGGTGATCCCACAATCATGTCTGGACTATGGGGGCTCCTGCAGTCTTACTGATGCTCACCCCGTTTGCAGAACTTTAATCCGCGGAAACTTTTTTATCCTTTTCATTATTGCTGTTCATTTGATATGCTATGTCTGCTGTGGATGTAGCCTATACCTGAAAGTACAGGAACACTATCCTAAAGCTGGGATTGGTTTTAATCTCCTCGTCGGCAACGAGTATGTCACTGCCAGCTACCAGGAGGCTGTCTCAATGCGCAGCTCTGACCTTCATCACTCTGCTGGTCTGCCCAGTTTGCCTGTCCTCCCGGCACGGCTCTCTGGGAAATCCATCCACCCTCCCAGGCCGCGCCCGTCGTCAGCTGCGCTACGTGAACGAGTGGAGCTCCTGGAGCGGCTGGTCTGCCTGCTCACGCACCTGCGGAGGGGGCGCCTCTGTCCGCAGTCGCACCTGCATTACCAGGAACCCACTTGGGGGGCCATGTTCGGGGGAACCCAGGCAGTACAAAATCTGCAATAGCAAGGAGTGTGCAGCGGGGTCGGTGGAGTTTCGGGAGCTGCAGTGCGCTGCCTTCAATGACAGGCCCATTCTGGGTGGAGGCACGTACAAGTGGACACCGTTTCATGGAGGTTCCAACCCCTGTGAGCTGAGCTGCCTGGCAGTTGGGAACAATTTCTACTATAACTTTGGGCGAGTTCTGGATGGAACACCTTGCCAGACAGAGCCCGGCGGAGTCTGTGTCAATGGACGCTGTTTGAAACCTGGCTGTGACCTCATCCTGGgctcagagcagaaggaagatGCCTGTATGGTGTGCGGGGGCCACAATTCCACCTGCCTGCACCACCACAGTGTGTACCAGAGCCACAGCCAGATTGCCGGCCCATTCGGATACAATGAGGTGACTATGATTCCTGCAGGGGCCACTCACATCCGAGTCACCGACAACAGCAAGAACTACCTGGCACTGCAGAACGGGCACGCCCAGTTCATCATCAACGGCAACTGGAAGATCAACGTACCTGGGGAGTACAGGGTGGCTGGGACCAAGCTACTGTACAAGCGCTCTGCAGACCTGTGGGAGAGCTTTGAGGCCATGGGGCCCACCCAGGAGGACCTGCACATCATGGTGTTGTCCACTGATAGGAATTCTGGGATTGAATATGAGTACTGGTTGCCCCCTGATCGCTACGCCCTGTACCACGGGAGGAAGAGCCCACTGCGGCAGCCACACCACACGGACAGTTTTCCACCATGGCAACCACCCACCACCACGCCTACTGTCACAACAACCACCACCTCCACAAccccaaccaccaccaccacgaCCAGGCCACCGCCCATTGGCTCCCGCCCACTGTGGGGGCCCAGGCCAggacaccccccccaccagcccCAGGCCCGGCTGGAGAGAGACGAGAACCGCAGCAACCTGCTCCCGCACCCGCCGCGCGCAGGGCATTGTGGGAAGTGCAGGAGAGTGCGGGGCAAAGGAGAACGCCAAAAACAGTACTGCCAAAAGGACTTCGTGTTCCGGGGAAAGGTCCTGGGGAAGCAGGACCGCGGGGAGGAGACACGCTACGACGTGCAGATCATCCACACGTACCGCAACCGTTTCCGCCTGGAGCACCGCGAGTTCCTGTGGGTGCCCAACGCGTGCGACTGCCCATCGTTGGACGTGGGGCACCACTACATCATGATGGCCCGGCGCCACGTCAACTATGAGCGGACACTCAACCGTATCCTGCTGGAGGCCGACAGCTACGTCCGCCCCTACCGCACCCGTGAGGACATGCTGCTGCGCCCCCTAGAGGAGAAGTGCAGTAACCAGGGACCCAAAGAGCCCTCCGAGCTGAGAGGCTAGCACTCCGAAGACGcaaaacacgcacacgcacacgcacagacaccTTCTCTCTTGGACAGCGCATCCTGGAGCCGCACACGCAACCAGAGGAGACCGGCCAAGGTGTTTGTAATGACCCACAGGGCCAACATCAGGGGGAGGGAGCTCGGAGAACTGTTTTGAGGACCATTTAATAGATATCCGGGAGGCATGATGCTCAGAATAGAGATCACGCTGAATGATgaaaatagaatttaaaaaaataacagaaaagagTCCAGGAAATCCATGAAGTTGCCAGTATGATTTGGAGGACATGCCCACctgaacaacagcaacagcacaaCTCTGAATCTCAATGGATGAACAGAGGAAGGTAGTCTGCTGAGGTTTACCACTTAACCACCACTTTAAAAGGTGCAATAAATAtctggggaagaaaaataaatcaatgcaaaaaaatgcctttgattataaataacaaagaTGTCAGTGGTGCATATTTAGTACTATGTTACTGTAAGGAAGTCTCATAAGTAACTCCTGCTgagctttttaattgtatgtcaGCCTGCATAGTAAACAGTACCGGTTCTCTTGCCAGGAGTCAGAGCACCTCCCACAGCTCAGCACCACAGACAGGGCCTGGGCCTTAAACAGCCCATCACCCTGAGTGTGTGTAGGATTTAGTTAGATCTTaaactctgtgtttgtgtttgattgcCTGCCCTTTGCCCACTAACCGAACCCCACCTCTTTAAGACAGCACTGTGTATTGGTCTGTGCCATATTTATGAAGCCAAAGGatagagagaagaaaaatcacTGGTTTATAAGCgataaatgcatttatacagGTGTATTGTTTCTAAAGTATTGCCACTATTTTTCAATCTaacaaagtgtattttattactatttgaatattataattattttgtattattgttgttattatcctttaataatataaaatgtacataatccTCCATGAAGCCATGATTCTTCTGTATCTTTACCTCCATTAGCAACCTGTCTGTAGATACAAGATACATGGGTGGtccacatggaaaaaaaaaaaaaaaatgggataATATCAAGACTGAACTTCATTTTCTATTTGGCCTCTTGTGAGTTTATCAAAACTAATCTTCTCAAGCCAAAACAGAATGTGTTCCAGACCAATTTCATCTTTTTGACTCATTCCCATGTCTGTAAGAGCTACCCGTGTCACTGCTGTGAGATTACTATATGAAATGAAGACAACTCTCATTGTTGTATCTTGGTAAAAGACCCAAACCGGTCCTTCTGGAATCGGCCGTTCTGGGCACATTCtcaggattcctgtgtgggaacGTCTAAGCCGTGCTATAAAACTGTAAGGCACATGCaagaacaaccaaaaaaactacatatttataataacaatgtatttaaaaaaaaaaaaccttcacatTAAATATGACTACTGCTGTATACTCTTAAAAGTTTCAAA

Function

GO: NA

KEGG:

id description
K24432 ADAMTSL5; ADAMTS-like protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31454 lncRNA downstream 27716 24050148 ~ 24050436 (-) True G25079
TU31453 lncRNA downstream 28079 24049815 ~ 24050073 (-) True G25078
TU31452 lncRNA downstream 28368 24049553 ~ 24049784 (-) True G25077
TU31451 lncRNA downstream 28715 24049224 ~ 24049437 (-) True G25076
TU31450 lncRNA downstream 29672 24047660 ~ 24048480 (-) True G25075
TU31569 lncRNA upstream 246426 24347099 ~ 24347419 (-) True G25175
TU31570 lncRNA upstream 249357 24350030 ~ 24354310 (-) True G25176
TU31571 lncRNA upstream 267496 24368169 ~ 24368373 (-) True G25177
TU31655 lncRNA upstream 332407 24433080 ~ 24507819 (-) True G25239
TU31671 lncRNA upstream 397692 24498365 ~ 24542158 (-) True G25248
AMCG00007625 mRNA downstream 23062 24052472 ~ 24055090 (-) True AMCG00007625
AMCG00007624 mRNA downstream 32780 24032553 ~ 24045372 (-) True AMCG00007624
AMCG00007626 mRNA downstream 47582 24022553 ~ 24030570 (-) True AMCG00007626
AMCG00007627 mRNA downstream 56207 24017465 ~ 24021945 (-) True AMCG00007627
AMCG00007623 mRNA downstream 66524 24004839 ~ 24011628 (-) True AMCG00007623
AMCG00007630 mRNA upstream 13882 24114555 ~ 24148021 (-) True AMCG00007630
AMCG00007635 mRNA upstream 49671 24150344 ~ 24186890 (-) True AMCG00007635
AMCG00007634 mRNA upstream 150793 24251466 ~ 24256041 (-) True AMCG00007634
AMCG00007637 mRNA upstream 162017 24262690 ~ 24281564 (-) True AMCG00007637
AMCG00007644 mRNA upstream 267958 24368631 ~ 24403122 (-) True AMCG00007644
TU31390 other downstream 105487 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 3605448 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 3746341 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 4154999 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 5300514 18776360 ~ 18777638 (-) True G23838
TU31562 other upstream 165151 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 1163659 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 1530122 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 10768762 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 13139416 37240089 ~ 37242983 (-) False AMCG00007929

Expression Profile