RNA id: AMCG00007632


Basic Information

Item Value
RNA id AMCG00007632
length 2098
RNA type mRNA
GC content 0.55
exon number 16
gene id AMCG00007632
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24256146 ~ 24261899 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaaactacatttcccagaacaCACTGCGATGTTGTCACGTTGTGTCATCGAGCTGCGGCGGTTTGCTTGGCGGTGTTTTCATGTGCAGGGAAGTTCTGGTTCTGTCCCGATATAGCCCGAGTCTCGGTGGTACCTGGGTCTGGTATCACAATGATCCATGAGCTGCTACTGGCTTTAAGCGGGTACCCAGGTACCATATTTACGTGGAATAAACGGACCGGTTTACAGGTGTCACAGGACCTGCCTTTCCTCCACCCCAGCGAGTGCAGCGTCCTGAACCGGGTGTGCAAGCTGGGCACGGACTACATCCGCTTCACTGAATTCATCGAGCAGCACACCGGTCATGTGCACCAGCAGGAACACCATGCTGCTCAGCCAAACCAGTCTGGACTCCATGGGATCTACCTCAGAGCGATCTGCACTGGGCTTGACTCCATGCTGCAGCCTTACCGCCAAGCCTTGCTGGACCTTGAGCAGGAGtttctgGCAGATCCCCATCTCACCATCTCTCATGTCAATTACAGGCTGGACCAGTTTCAGTTGCTGTTTCCCTCGGTGATGGTAGTGGTGGAATCCATTAAGTCGCAGAAGATCCATGGCTGTCAGATCCTGGAAACGGTGTATAAACATAGCTGTGGAGGTCTCCCCCCTGTGCGCATGGCCTTGGAGAAGATTCTGGCGGTGTGCCATGGCGTCATGTATAAACAGCTGGCTGCCTGGATGCTGCACGGGCTGCTGCTGGATCAGAGCGAGGAGTTCTTTGTGAAGCAGGGTCCCAGTGTCGGAGGGGTGACCCCAGcccaggaggaagaggaggaagaccTGGGGATTGGAGGGCTGAGTGGGAAACAGCTACGAGAGCTGCAGGACCTGCGGCTGACTGAGGAGGAGAACATGTTGGCTCCATCCCTCCAGCAGTTCTCCCTGCGTGCCGAGATGCTGCCCTCCTATATCCCTGTGCGCGTGGCTGAGAAGATCCTCTTTGTGGGCGAGTCTGTCCAGATGTTTGAGAACCAAAATCAGAATCCATCCCGCTCTgGCTCAATTCTGAAGCATCAGGAGGAGCTGTTTGCCGCAGAGCTGCATCGGCTCAAACAGCAGCCACTCTTCAGTCTGGTGGATTTTGAGAACCTCATTGATTCCATCCGCAGCACGGTGGCAGAGATCATTAAAGATTTCTACCTGCTTGGACGGGGGGAGCTCTTCCAGGTGTTCATCGACCACGCCCAGCTCATGCTGAAGACGCCTCCCACTGCTGTCACAGAGCATGATGTGAATGTGGCGTTCCAGCAGGCGGCTCACAAGGTGCTGCTCGATGATGACAACTTGCTCCCTCTCCTGCACCTCACCGTTGACTACCAGGGAAAGGAGCCCAAAGATGCTGCTGGGAGTCGCGAGGGAGCCACACCCCCTCAGGAGTCCTCCCCCCGGGAAGTGCCGCCCACTGGCTGGGCTGCCCTGGGATTGGCCTATAAGGTTCAGTGGCCTTTACACATCCTGTTCACTCCTGCTATACTGGAGAAGTACAATGTGGTGTTCCGCTACCTGCTCAGTGTTCGCAGGGTGCAGTCAGAGCTGCAGCATTGCTGGGCTCTACAGATGCAGCGGAAGCACCTGAAATCCAATCAGACAGACGCTGTCAAGTGGAGACTACGCAACCACATGGCCTTCTTAGTAGACAACCTCCAGTACTACTTGCAGGTGGATGTGCTGGAGTCCCAATTCTCCCAGCTTCTGCAGCAGATTAACTCAACCCGTGACTTTGAAAGTATCCGATTGGCCCACGATCACTTCCTCAGCAACCTGCTGGCACAGTCCTTCATTCTGCTTAAGCCAGTGTTTCACTGCCTCAATGAGATCCTGGAGCTGTGCCACAATTTCTGCTCGCTGGTCAGTCAGAATCTGGGCCCACTGGACGACAGGGGAACTGCTCAGTTGGACATCCTAGTCAAGggtttcAGCCGGCAGTCGTTCCTGCTCTTCAAGATCCTGTCAAATGTTCGCAATCACCAGATCAACTCTGACCTGGCCCAGCTGTTGTTGCGGCTTGACTACAACAAGTACTACACCCAGTCTGGGGGGACGCTGGGCAGGTAG

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16571 TUBGCP4, GCP4; gamma-tubulin complex component 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31536 lncRNA upstream 233 24254790 ~ 24255913 (+) True G25148
TU31525 lncRNA upstream 27236 24228636 ~ 24228910 (+) True G25138
TU31520 lncRNA upstream 42702 24211682 ~ 24213444 (+) True G25134
TU31480 lncRNA upstream 102298 24150343 ~ 24153848 (+) True G25103
TU31459 lncRNA upstream 168842 24085407 ~ 24087304 (+) True G25084
TU31598 lncRNA downstream 179398 24441297 ~ 24469767 (+) True G25196
TU31599 lncRNA downstream 209140 24471039 ~ 24473147 (+) True G25197
TU31605 lncRNA downstream 214588 24476487 ~ 24499589 (+) False AMCG00007640
TU31607 lncRNA downstream 222387 24484286 ~ 24490421 (+) False G25203
TU31608 lncRNA downstream 222387 24484286 ~ 24490748 (+) True G25203
AMCG00007633 mRNA upstream 25561 24229522 ~ 24230585 (+) True AMCG00007633
AMCG00007631 mRNA upstream 61665 24192292 ~ 24194481 (+) False AMCG00007631
AMCG00007622 mRNA upstream 178798 24056196 ~ 24077348 (+) True AMCG00007622
AMCG00007618 mRNA upstream 204319 24048234 ~ 24051827 (+) True AMCG00007618
AMCG00007620 mRNA upstream 211745 24041906 ~ 24044401 (+) True AMCG00007620
AMCG00007636 mRNA downstream 74662 24336561 ~ 24349947 (+) True AMCG00007636
AMCG00007638 mRNA downstream 187423 24449322 ~ 24461405 (+) True AMCG00007638
AMCG00007640 mRNA downstream 230003 24491902 ~ 24499650 (+) False AMCG00007640
AMCG00007641 mRNA downstream 260566 24522465 ~ 24536808 (+) True AMCG00007641
AMCG00007639 mRNA downstream 310987 24572886 ~ 24574030 (+) True AMCG00007639
TU31514 other upstream 61665 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 1062625 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 1973188 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 3189363 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 5200013 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 3821923 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 4191110 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4741196 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5503929 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 11349217 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile