RNA id: AMCG00007634


Basic Information

Item Value
RNA id AMCG00007634
length 2710
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00007634
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24251466 ~ 24256041 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGATATGTAGTACTGTTGGCGGCGAAGGAACAGGCTGCAGTGTTAGCAGTGAAGCCACTGGCATTGTATATTAAAGGGGAGACCTAGTTGGAAATGTTCAATTCTGGCAACAAGGACAGCTGTTGGGAATCCCAGCAGAAGGGTACCAGGTGCTGATTAACACTAAAGCCTACATGGTGTTGCAGTGATGGCGGAGGGGAGGAGCGGAGAGGACATTGTAGCCGAGTTCCTCCGTCAGAACCCCCACCAGGCGCAGTGGGTGGAATCTCTCCGGGGGCATTGTGAGACGGACAAGCAGTGGAGCGCCAGGCGTGAGTTCATCCTGCGAAATATGGAGGTCTTTCCCACCATCCAGCCAGGCATCCCCAGCCCCAGCCTGGACCGCCTACTCGCGCTCTCTATGGCATGGGCTAACCACGTTTTCCTGGGTTGCCGGTATAGCCAGCCTGTAATGGACAAGATTATGGAGATGGCAGAAGGTGTCGTTGTTCAAGATGCTCCAGTTTTTAGGACAAGAGATGAGATAATGGGCAAAGGCGGGGAGACTGACGGCTCGGGAAAGAAGCTGAGGCCTGGCAGCAGTGGAGTCCGAGCCTCTGGACGAGGGGGGACCAAACCCGGACCCTCGCCGCAGGCACCCATCGAGCACCAGCCCTTTTTCAACCGCTTGTACAAGGCAGTGGCCTGGAAGCTAGTTTCGGCAGGAGGATTCGGACCCAACCTGGACCACTATGACATCCTGCGGGCCTGTGTGGAGGCGTCCAAGTCCAGCCTGAGCTGTGTGTTCGTGCCCCTGAAGGACATCCCCGACCTGCCTGCCAGCCGTGTCCAGAAGGAGGGCCAGGTGTGCGAGCTGCGCTGCCAGACAGTCTATTTGGGCACTGGCTACGGCCGCAGCGAAGATACCGCCAGGGCCATGGCTGCCAAGGAGGCCCTCAAGACCTTCCAGGGTCGCAAGGTCACAGTGAAGGTATGCCGGCGGAAGTACCGTGGGAAGGACGTGGAGGACTTGGTCCTGCAGGACGACCAGCTGAGGAACTCGGGCATCCCCCCTGCACTCGGCTACCCCTTCCTTCCTGAGCAGCAGGCAGCCACCCTTTAATACTGCAAAAGACTGCAAAGCATCTtgaattagttttgtttttgttttgaggcGGGGGGTTGTTGGCTTTCTTTCTCTGCTGCTCCTCTTAACTGCTCTGGTATCTCAGCAGGATTTATGTGAAAATCCcttagtagtttttttttttttttttaataaatatgtaaccCTGGTCTTGAAAGAGCTGTTCTAGAGCATTCTGACGACAATGCAGGCAGAAGAAACTGAATCGGTTGTGTCAGAATGCAGCCATCAGGTGGCACCATTTAGACATACAATTTCATTAGTGTTCGAGTTCAGATTCAGTGGAAAGGAAGAATCGGTTTAagtttgtgttgatttaatatatagaaataacattttgatgAATCTGACACTACAAAGCTTAATAGTTTACCCTTAAAATCTTGGGAATGTTCTTTTATTAGAATGTGGCATTTGATGAGGGTCATGTTGGACTGTGTCAAATCAATCTTCTACACTCTAGTTTTCAGTCAAAGCATTCTCGATAAGTACAAGGCAAATGGTTAATTTATAGTCTTTTAGttttaacacattaaattaTAGCCCTGTATAAGTTTATTGGAAATCCATGTATTACAAATCTCATAATGCTGATGTTACCAGTTtcaatattttttggtttgatttgtttgtaatGTGAAGATATAATAGAGATTAAGTGCATCTGAATTTCAAAGAACATGTCAAATGATCTTCCCAAGCAAAGCATAAAAGAGaatgcaagtttaaaaaaaaatggaagtgcATAAATGTCTGTTCGCATTGTGACGCACAGTATTTTGAAGGTGCAAGTACCACTAGGCCTATGTTTTCTGATTCTTTGAGTACGAATAACTTACTCCTCTGTTCACCATAAATCACAGCAGTTACCATTTCcaacttattttttcaaacactttAATCGTTTTGAGAGAAGGCAGCAGGTATAGTACTGTATTATGACCTGCTACTGCAGGGAAGTGCACTCACTGTCCAACAAACTGCTGAAATTCGTCTTGCTATAAGTTGGTACATTGATTTCAGGTATTACAATTAAAGCAGaagatttacacatttattagtTTAAATTTCAAAAGTTATAGAATCATTACAAATCAATAAGTTCAGTCCATTGCAATCAAAGAAAGGGATTGTTCAGGCACACCCAAAGGAGAGCTCTCTGAGTAGAGAGACAAAGGCAGCTTTGTTCTGTAATCGTGGTGAAGGGAACTGAATGCAGTCTAATGAGGTCATAAGATAGTGTCGTGCATGGGTAGAACTGAATAGCAAAAGATTGCTGTGGGGGCCGGTTAATACATGGAGTTGTCAACAGTTGTCTTGGCATGACTATTTGATCCAAAATACagtttatgttcttattttgttgTAAGTATAGtaggaataaaatatttttaaaagtatgtttGGTTTTGTTGCACTAGtgtattgtttcattgttttttatgttcatattacTAGACATGTGGCATCCTTGATCTCATCCTCTAAGTCTGTGGTCTTCAATCCCTGGAGGGccatgtgtatgctggttttcaatCCAATAGACTccttcaattacttaattggtctaattgtttaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31454 lncRNA downstream 201030 24050148 ~ 24050436 (-) True G25079
TU31453 lncRNA downstream 201393 24049815 ~ 24050073 (-) True G25078
TU31452 lncRNA downstream 201682 24049553 ~ 24049784 (-) True G25077
TU31451 lncRNA downstream 202029 24049224 ~ 24049437 (-) True G25076
TU31450 lncRNA downstream 202986 24047660 ~ 24048480 (-) True G25075
TU31569 lncRNA upstream 91058 24347099 ~ 24347419 (-) True G25175
TU31570 lncRNA upstream 93989 24350030 ~ 24354310 (-) True G25176
TU31571 lncRNA upstream 112128 24368169 ~ 24368373 (-) True G25177
TU31655 lncRNA upstream 177039 24433080 ~ 24507819 (-) True G25239
TU31671 lncRNA upstream 242324 24498365 ~ 24542158 (-) True G25248
AMCG00007635 mRNA downstream 64576 24150344 ~ 24186890 (-) True AMCG00007635
AMCG00007630 mRNA downstream 103445 24114555 ~ 24148021 (-) True AMCG00007630
AMCG00007629 mRNA downstream 150793 24078152 ~ 24100673 (-) True AMCG00007629
AMCG00007625 mRNA downstream 196376 24052472 ~ 24055090 (-) True AMCG00007625
AMCG00007624 mRNA downstream 206094 24032553 ~ 24045372 (-) True AMCG00007624
AMCG00007637 mRNA upstream 6649 24262690 ~ 24281564 (-) True AMCG00007637
AMCG00007644 mRNA upstream 112590 24368631 ~ 24403122 (-) True AMCG00007644
AMCG00007648 mRNA upstream 207686 24463727 ~ 24464347 (-) True AMCG00007648
AMCG00007643 mRNA upstream 214994 24471035 ~ 24479836 (-) True AMCG00007643
AMCG00007645 mRNA upstream 227971 24484012 ~ 24495209 (-) True AMCG00007645
TU31390 other downstream 278801 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 3778762 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 3919655 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 4328313 19915146 ~ 19923153 (-) True AMCG00007487
TU29846 other downstream 5473828 18776360 ~ 18777638 (-) True G23838
TU31562 other upstream 9783 24265824 ~ 24267921 (-) False AMCG00007637
TU31883 other upstream 1008291 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 1374754 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 10613394 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 12984048 37240089 ~ 37242983 (-) False AMCG00007929

Expression Profile