RNA id: AMCG00007638


Basic Information

Item Value
RNA id AMCG00007638
length 4080
RNA type mRNA
GC content 0.53
exon number 16
gene id AMCG00007638
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24449322 ~ 24461405 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCACTTTGCTTCTAGTGTTTGCGTGTTTGCGTGTCATCGCAGCATCAATCTCTGTCGAACTGTCAGACTCTGAGAGTGCACTGAGCGTCAGTGTCCCTGCACAGTCTCCACTACAACCCCTGTTGGGTGGCTCACTGGCCGTGCCCTGCTACTTCCTGGACAGCACCCCCCACGACCCTGGCGCCCCCACAGCTGCCCCCCTGGCCCCCCGCATCAAGTGGAGTCACATCACCAAGGATGGCGAGTCCGTCATCTTGGTGGCTACAGACGGCAAGGTGCGAGTCACCTCCGAGTACATGGACAGGGTCACCATGGTCAACTACCCCCTAGTGCCCACAGATGCCACCATGTTGATCACAGACCTGGCACACAGAGACTCCGGCACCTACCGCTGTGAGGTCATGCACGGCATAGAGGATAGCCAGGACACCATTGAGGTCCAGGTACAAGGTATTGTGTTCCACTACCGTGCAATCTCAACTCGCTACACCTTGACTTACGAGAAGGCCAAGGCTGCCTGTGTCCAGAACAGTGCCGTCATCGCCACCCCACAGCAGCTGCATGCGGCCTACGATGACGGCTTCCATCAGTGTgatgctggctggctggctgaccaaactgtcagGTACCCCATTCACAGTCCACGGGAGGGTTGCTATGGTGACAAGGATGAGTTTCCTGGTGTCCGTACCTATGGGGTGCGAGATGTCAATGAGACGTATGATGTGTACTGTTTCGCCCAGAGGATGTCAGGCAGGGTTTTCTACTCCACCTCTCTAGACAAATTCTCCTTTGTGGAAGCAGAAGAGCAATGTATGAAACTGGGCGCTCAGCTTGCCACCACTGGGCAGCTGTACTTGGCCTGGCAGAAAGGCATGGATGTGTGCAGTGCTGGCTGGCTTGCAGACAGGAGTGTCCGCTACCCAATCTCCATCGCCAGGCCCAACTGTGGGGGGAACCTTGTGGGAGTGCGCACTGTCTACCTCTACCTGAACCAGACCGGCTACCCCTACCCTGACTCCCGCTATGATGCCATCTGCTTCCAAGAGGACATCGAAAGTTCTGCTTTGACAACGGTTGACTACACAGAGTTCGAGACAGCAACTACAGAACTGGGAACCCTGCAGAGTGTGGCAACCTTCACAGAAGGCCCTGAGGTCTTCTTCAGAAACACCACTAAAGAGAGTGAGGTTTTAGGGGAGGTGGTCACACAGGAGCCCATGAACTTCACCGGCACTGACTTCCCCTACAGTATCATTCCCGAATTAATCTACCCTGAGGAGAATGTCACAGACCTGCCCCTGTCTCCTCCCCCTGCAGTCACTGAAGAGGATTTATTCATAAATGCAACTGAAGTAGTTGAAGAGTTCATCCCCATGGGCACTGCCCCACCTGATGCGGGCAAAGAAGTCACAAAGCCAACGGAGCTCTCTCCCACAGGCATTGTATTTCACTACCGGGTGGAATCCAGACGATACTCCCTGACCTTCGTAGAGGCTCAGCTGGCCTGTCAGAGCATTGGTGCCATCATTGCCACCCCACAGCAGCTCCAAGCAGCCTTCGAGAGAGGGTACCACCAGTGCGATGCAGGCTGGCTTCTGGACCAGTCTGTTAGgtATCCAATTGTTACTCCACGAGACCAATGCCTTGGGGATATGAACGGGCTCCCTGGTGTGAGAAACTATGGCGTGCGGCCGGCCACTGAGCTGTATGATGTGTACTGTCATGTTGATGGACTGATGGGTGAAGTGTTCCATGTTAGTTCACCAGAGAAGTTCACCTATGATGAAGCCATGTCCTACTGCCGTGAGCAGAACGCCACCCTGGCCTCCACTGGGGATCTGTATGCTGCATGGGGACAGGGCCTGGACAAATGCcgggctggctggctggctgaccGCAGTGTCCGTTACCCAATCACCGACCCCAGGCCGCAGTGTGGTGGTGGGAAAGCCGGGGTTCACACTGTTTATCTCTTCCCCAACCAAACTGGCTACCCTGATTTGTCCTCCAAATACGACGCCTACTGCTACCGGGCTGATCTTAATGCAACTGGACTGAACTTCACAGAGATTGAACCATGGATTAATGATACAGAGAGGCCTGTAATCTCCTCCATTGCTCCTCCCATCTCTGTGGAAGTAAGTAGCTCTGGTTCTGCCGGGTTGCCTTCTGGATTCTCAGGTATTGGCTCAGCAAGTACTGAGATTCCCAGTGGGAGTGAGATGCTCAGTGGGTGTGCTGAGGTGTCAAGTGGGAGTGCTGAGATGTCCACTGGGTGTCCTGAGTTGCCTAGTGGAATTCCTAGTGGAAGTGCAAGTGGGGAGAGTGGAGCATCAGCATCTGGGATCAGCGGGGATATCACAAATACCCCAGTGACCTATTTACCAAGTGGAATAGGACCATCTGGTGAGGGATCTGTGTCTAGTGGCACCTCTGGAGAAGAATTTGTAGAAGGACCTTCTGGAATTTTAATCATTTCAGGAAGTGGGTCTGGAGACTTTAGTGCAGGGTCTACTAGTGCCTTTAGTGGGGACTTTTCTGGACACATATCTGGATTTCCTGATAGCAGTGGACTCTTTGTGGAATGCGGCTCTGCATCTGACGTGATGTTTAGTGGTTCTGGAATTTCGGGAAGTGGGGACCTTTCAGGAGAGTCTGGGTTTGCAAGCACAAGTGGGGACCTTTCTGGATTCAGTGGGCAGCCATCAGGAATTGGCTTAACTTCAGCGGATTTCAGTGGCTTATCAGGAGACTTTGATAGCAGTGCTGATTTCTCAGCAATTATCCTGGTACCAGAAGAAGATATAGAACTACCTCCCACAACGAGGCCTGTTATGGAGCACACAGGTGAACGGTTTGAGTTCAGTGGTTCAGGAGATCTATTCGGATTACCCTCTGGGATAAGTGGCTTTGACAGTGGATCTGGTCCCAGTGGGTCAGCATCTGGAATCCCTGACATCAGTGGATCTGGATTCCTGGGAGTGACCTTTGTGGACCCTGGTTACACAGAGGGTACACCGAAACCTATGACTGAGGAAGAAGTAGTAGAAGGATCCGCAGAAATCCTTGAATTTGCATCTGGCGCAAGTGGATATCCCTCTGGTGCATCTGGTCTAGGTATCAGCAGCGCATCTGGGTTAATTTCTGGAGACTCCTCAGGAGAATCTGCCAGTGGGGCCTTCCCTTTCCTTAACAATGACGAGTTAGTAGAAGTTTCCATCCAGCCAACACTGAGCATGGAGCTTAGCGGAGAGGGGTCACTTACATCAGCGATGTGGGAGCACTCTGGTGCAGTGGACATCAGTGGAGATCTATCAGGAATACCTTCAGCTGACCCATGTGAACCCAACCCGTGTGGTGAGGGATCGTGCTCTGTGCGTGATGGCATTGGATTCTGTCACTGCCCACCTGGCCTGAGCGGGGACAGCTGCCAGATGGCCCCCTCCTGGCCTCTGCACCAGCATCTGCTCTGGGTCCTGTCCACGGCAGGAATCCTAACAGCGGACCCTTCATTTTTTGCAGACATTGATGAGTGCCACTCGAATCCCTGCGCCAATGGAGCTACCTGCGTCGATGGTATCGACTCTTACAAATGCTTATGCCTTCCCAGCTATGGAGGGGACCTCTGTCAGATGGACGTGCAGAGCTGTGAGGAAGGCTGGCAGAAGTTCCAGGGCAGCTGTTATAGACATTTCCCCGAGCGAGAGACCTGGGTGGACGCTGAGCGGCACTGCCGAGAGCTGGATTCCCACCTGGTCAGCATCATCACCCCTGAGGAGCAAGAGTTCATCAACTACAATGCACAGAACTACCAGTGGATCGGACTGAACGACAGGACATTGGAGAATGATTTCCGCTGGTCTGATGGATCCTTCTTGCAATATGAGAACTGGAGACCAAACCAGCCAGATAACTATTTCAACACAGCGGAGGACTGTGTGGTGATGATCTGGCACGAGAATGGCCAGTGGAATGACGTGCCCTGTAACTATCACCTACCCTTCACCTGCAAGAAAGGAACAAGTAAGGAAAGAGCTGCAGTGGCGAAGCAAGGCCTCGGCACACCCATATAG

Function

GO: NA

KEGG:

id description
K06792 AGC1, CSPG1; aggrecan 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31536 lncRNA upstream 193409 24254790 ~ 24255913 (+) True G25148
TU31525 lncRNA upstream 220412 24228636 ~ 24228910 (+) True G25138
TU31520 lncRNA upstream 235878 24211682 ~ 24213444 (+) True G25134
TU31480 lncRNA upstream 295474 24150343 ~ 24153848 (+) True G25103
TU31459 lncRNA upstream 362018 24085407 ~ 24087304 (+) True G25084
TU31599 lncRNA downstream 9634 24471039 ~ 24473147 (+) True G25197
TU31605 lncRNA downstream 15082 24476487 ~ 24499589 (+) False AMCG00007640
TU31607 lncRNA downstream 22881 24484286 ~ 24490421 (+) False G25203
TU31608 lncRNA downstream 22881 24484286 ~ 24490748 (+) True G25203
TU31604 lncRNA downstream 29595 24491000 ~ 24499589 (+) False AMCG00007640
AMCG00007636 mRNA upstream 99375 24336561 ~ 24349947 (+) True AMCG00007636
AMCG00007632 mRNA upstream 187423 24256146 ~ 24261899 (+) True AMCG00007632
AMCG00007633 mRNA upstream 218737 24229522 ~ 24230585 (+) True AMCG00007633
AMCG00007631 mRNA upstream 254841 24192292 ~ 24194481 (+) False AMCG00007631
AMCG00007622 mRNA upstream 371974 24056196 ~ 24077348 (+) True AMCG00007622
AMCG00007640 mRNA downstream 30497 24491902 ~ 24499650 (+) False AMCG00007640
AMCG00007641 mRNA downstream 61060 24522465 ~ 24536808 (+) True AMCG00007641
AMCG00007639 mRNA downstream 111481 24572886 ~ 24574030 (+) True AMCG00007639
AMCG00007650 mRNA downstream 117726 24579131 ~ 24586370 (+) True AMCG00007650
AMCG00007649 mRNA downstream 131891 24593296 ~ 24620644 (+) True AMCG00007649
TU31514 other upstream 254841 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 1255801 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 2166364 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 3382539 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 5393189 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 3622417 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 3991604 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4541690 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5304423 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 11149711 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile