RNA id: AMCG00007642


Basic Information

Item Value
RNA id AMCG00007642
length 2647
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00007642
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24559055 ~ 24562456 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACACCTAACGTGCCCATCGGAGAAGGAATGCCTGGTGTTTGTGGATTAGCAGGCTCTTCAATGAAGGGGGATAGAACTTCACCTGTTAACCCCTGGGGCCCTCTGAACCCTCCCAGAGGCACAGTCTCTGGTGCCACACCTCAGTCTCAGGTGCTGTGCCAAAGCCCTGGATGCCACGGGCCAGTGGGGAAGCCAGGCCTCAAGACGAGACATTTGCGCAAGAGGCAGCGCCTACTGGAGAGGAGTGCTGTGCTGGAGAAGGCTGGGGTTCTCAAGAGGAACAGCAGCCACGAAAACAAAGACCAGGGTAGTAGAGGCGGCAGTGTCTGTTCCAGCGGGGCCAGTGGAGAGCTGTCAGGGTCAGATCAGCTCTCTGTCAAGCCAGGGACAGACCTTTTGGCAGGCAGTGGCAGGAAACACAGCCCTAacatggagaaagagagaacacTGCCCCTAGCTGGTGATAAATGGGAGGGCGACAGCGGGTTCTCCTCAGAGGCCAGCCCCACTGCCAGTGGCCGCAGCTCTCCCTGCGCCTCGCCCTGCTTCGGCCCGTCCAAACTGGTGGCCCTGGATTGTGAGATGGTGGGCACGGGCCCAAAAGGCCGCTGCAGCGAGGTGGCCCGCTGCAGCATTGTGGGTTACTATGGAGACGTCCTCTATGACAAGTACATCCAGCCCCTGCAGCCTGTGACGAACTACCGCACTCGCTGGAGCGGCATCCGCAGACATCACCTGCTACATGCCATACCTTTCAAAGAGGCGCAGAGAGAGATCTTAAAGATGTTGAAAGGGAAGATAGTGGTTGGCCATGCCTTGCACAATGATTTCTGGACTCTGAGCTACTTCCACCCTCGTCACATGACCAGAGACACCAGCCACCAGCCTCTGCTCAGACAACGAGCCAGCCTTCCTACCAAGGACAATGTTTCTCTGAAGAACCTTGCCAAGAAGCTCCTTAAGAGGGATATCCAGGTGGGCAGAGCTGGACACAGCTCAGTAGAAGACGCCATGGCTGCTATGGATCTGTACAGATTGGTGGAAGCGGAGTGGGAACTCCAAAACCAGGCCAAGCTGTCAGTCACAGACCTTACCCCCACCCCTGAGCCTATCTCCTCCCCCAGCCACTACATGCAGGACCAGTATTGGCCAGAGGACCTCAGTGAAGACTCCAAGTGAAATGTGGAGCATAGTTTTGGATGGAAGAATTGGTATTTATTCGCAGATCTGATCGTTTTGATATCTGTGGGATATCTACCTCTACTCTGAGCAGTGTGCTTCTCCCATAGTGTGTGTGGCATTAGGATCACGGTGGCCTAATGAGTTCTAGTGGTGTTGTACTTGAATCAGTGTCTGGggacactttattattattcttttattatCACAAGTACTGAATTGTAATGGCATTTTAACTTTGGACGTTATAAAGTAGGTCAAGCTAGGCTACCTGTAGTAAAtactaaaaatatttatatattaaaataatttccttgaGAGCTGCCCCTTTATGTAAATGGTGCATACAATTTAAGGACCATAAGGCAATTCATgacaattcatgtttttactgCAGTATGGTgcagtattttgaaaacaaaccgCAAGATCGAATCGGTGATATGCAGTGTAAGTTATTGTTATAACAGGTTTTGAGTTCCTCTTGTTTTATTGATCTTATTGCAGAGGTTTGAAGTGTAGCTCTTAACAGAGTAATGTGATCAAGGTGTAAATATTTTCCAACTCgctgtattaaaaatattgagGTCCACCACGATCCTGGTATCTGCAGCAAGGAAGAATCCCTATGATTTTGGTGCAACCAAAAGCCATCTTCAAAATAAGACAAGTGAACTTTAAATAATTGCCTTACGATCTCTTCAGCTTCTCCTGTTGCTCGGAATGGTTTTATGTCCAAATAGCCTTAGTGCTGCAGGACTGTATTTCATACagatttaaattagtttattgcAATCTTGCTGATTGGTTTGTTAATCCTTCCATCAAGCATTTGTAAAGTATTAAGAGTTCCATTAAGGACTGCTTTTATCCCACAACTTCTTCAGATAGGATATTCCAGGAGGCCCTGCTGGCAGATTTCACTGTACAATACTGTTGCATTTGACAGTGAAAAGATTAACTgcaagtaattatttttaagtgttatggccttaaaatgactttaaaaaagTCACGTTCTACTGACCTCATCCGCTCCCAATCTGTATCTCGGAGTACTCTGTGTGGAGGAGGGTTGTGTCCTTGGTCTCTGCTATTTCCAATCAGTCGCACAATGATGAGAATCTCCCAACATGCAGCTCTTGGTGAAGGGGGATTGTGAAACTCGAACTGTGGTCTAGGAAGATCACATCTGTCCTTTGTGTGATGTGGGTtctgtgaaaatgcattgttgttCACATAAACAGTGCCTAGTCCATGGTACTGCAGTCCTAAACTGAAACGCTTGGTCCTGCTTGACTTGTGCAGGATGTACTGAGATGGACAgaaatgttctctctctccatgtctgTGTCTGGGACTGATCCCACTGTTCAGTCTGCAGTGCACTGAGATAATGGTTGAACAGGACTGAATTGCCAAGTAACTTATTCATGTctaatgaaattaaaagtttaacTTATTTACA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K18340 AEN, ISG20L1; apoptosis-enhancing nuclease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31671 lncRNA downstream 16897 24498365 ~ 24542158 (-) True G25248
TU31655 lncRNA downstream 51236 24433080 ~ 24507819 (-) True G25239
TU31571 lncRNA downstream 190682 24368169 ~ 24368373 (-) True G25177
TU31570 lncRNA downstream 204745 24350030 ~ 24354310 (-) True G25176
TU31569 lncRNA downstream 211636 24347099 ~ 24347419 (-) True G25175
TU31821 lncRNA upstream 419478 24981934 ~ 24982139 (-) True G25375
TU31834 lncRNA upstream 426389 24988845 ~ 24989054 (-) True G25387
TU31874 lncRNA upstream 645318 25207774 ~ 25245930 (-) False G25415
TU31876 lncRNA upstream 645318 25207774 ~ 25247379 (-) True G25415
TU31882 lncRNA upstream 690260 25252716 ~ 25256361 (-) True G25421
AMCG00007647 mRNA downstream 8831 24546532 ~ 24550224 (-) True AMCG00007647
AMCG00007645 mRNA downstream 63846 24484012 ~ 24495209 (-) True AMCG00007645
AMCG00007643 mRNA downstream 79219 24471035 ~ 24479836 (-) True AMCG00007643
AMCG00007648 mRNA downstream 94708 24463727 ~ 24464347 (-) True AMCG00007648
AMCG00007644 mRNA downstream 155933 24368631 ~ 24403122 (-) True AMCG00007644
AMCG00007646 mRNA upstream 1339 24563795 ~ 24570297 (-) True AMCG00007646
AMCG00007652 mRNA upstream 52044 24614500 ~ 24624473 (-) True AMCG00007652
AMCG00007651 mRNA upstream 67050 24629506 ~ 24645364 (-) True AMCG00007651
AMCG00007656 mRNA upstream 199462 24761918 ~ 24779617 (-) True AMCG00007656
AMCG00007662 mRNA upstream 237384 24799840 ~ 24802378 (-) True AMCG00007662
TU31562 other downstream 291134 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 586390 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4086351 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 4227244 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 4635902 19915146 ~ 19923153 (-) True AMCG00007487
TU31883 other upstream 701876 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 1068339 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 10306979 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 12677633 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12932455 37494911 ~ 37499392 (-) True G27416

Expression Profile