RNA id: AMCG00007649


Basic Information

Item Value
RNA id AMCG00007649
length 6558
RNA type mRNA
GC content 0.59
exon number 32
gene id AMCG00007649
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24593296 ~ 24620644 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTTCGGCGTGTTGCGTGCCGTGCGGCGGACAGCGCTCTCCTGCGGCCGCTCCAGTCCCGCTGCTCCGCGCAGCCTCTGACCCTGCGCTGCGGTTTGTGTTTAAATCCCCGCATGTCATTCCCCGCCCGCAGAGCTCGGGTCGCCGGCCCCACTGCGGGACTCTGACTGCGATGAGGCGGATTGGTGGGCTGGCCTTGGGGGGCTCGGTTAGGAAGCGAGAGGAGTGGCTCCCGACGAGCCTGCTGTACCGCGGCGGAGCAGCGCCTGACTCCCCGCCATGTGACCAGCGTGACCGGCGCCGAGTCGAGCCGAGAGCCGGAGCGGCGAGCGCGGTCCCCTCTGCAagtcctgcaggagctgtttgCGGAGGCAGAGATGTGACATTACGTGGATTGGCCCGAGGCTGGCAGTGTACAGAGAGCGTCTCTGCTCAGAGCAGAATGGCTGTGCTACTCCTGCTGTTGGCGATCCTCTCAGTAAGACTCCCAGCTACAGGAGCAGcaGGCCAGAGGGCAGCGCAGCCAGTGGAGTTGTTGAAGGAGCTGGTATCGCTCTGGCAGAGAAGGGTTGAGGGGGCACCACAGAAAGAGCAGCCCCCCACTGTAAGGACACAAAGGCAGCGGATTCAGACTGTGGTCAGAAACATCATGGGGGGTCTCCAGACATTGGGCTTTCTGCCTAAGAAGGGCATCAGCCTGCCAaatctcctctctccccccagcAAATCTCTGGACAGGAACCGTCTGTCGGGCTTCTTGTATAATATCTCCATGTACCTGCAGGGGGCTGGGGGAGAGCCAGGGGCTGGTCCTTACTCCAATGATCAGGAACAGTTCTGGGAGAATATGCTGTACTCTCTCCTCCAGCCAGAAAGTGGCATGATACTCGAACAGTGGGAGGAGAAAGTTCCCCCCAGACCCAGCTTCAGGATCCGTGACCTCTTCCTGTCCCTACGGGGCAGCCGGCACTGGGATGGGCTGCTGGGGGTCATACAAACTGCCCTGAGCTTTTCTGAGAGGCAGCCACAGAGGCCTTTACTTAGCTTCCTCAGGCAGAACTGGGACACCATCAGTGCCCTGCTGGACACCATCATACAAGCACTTGTTAGTGGAACATATGGGCAAGCTAGTGCAGGTATCCAAGGGTTTATTTGTGTCTTAAAGGGACGTAACGACTGTGCCTTCAACCTGGGCTGgctgcagcagctcctcagCTTTTTGGAGGCACGGAACTGGAAACCAGTTGTCAATTTTCATCCGGGGGGTGTGATTGGGGGTCAGCAAGCTGGGGGACGCCTCAAGCCTTTCAGTATGCTCCCAGGAGCCTTCAAGGAGGAGAATGCATTCCCTAACCAGACGCAGCCCAACTCTGGAGGGCTGGGCTCCATGCAGACGCTCCTCCTTCAGGCTCTGTCAAGGTCCAATAGTGGAGAGAGGGCGGGGCAATCTGTGGAGCCGAGCCCTGCCCTCCTGCAGGGACTGGACGGGCTGCGGCAGGGCCTGTTGCGTAGGGTGGGCAGCACAGTGTACGGCAGCCTGAGGAGGAAGGTGTCCAGGGTGACTGGGGCTCTGCTGGAGGATGTGTCCAGCCTGGTGGGCGTGCCGCATGCAGACCACGAGGGGAAATGCTCAGTGGGCAAGGGAATCAGGCACAACCTCACCTGGAATGCCCAGGCTCTGGGATTCAGTTCCCAGGGCCCTCCCAGCAGACCTCCCTTCTTGTTCTGCCACTCCTCAGTGCAGGTCCAGCACAGAGGTTCTTCAGCTTCACGTAGACCCAGAGACACATCCCTGAATCCAGCGGCACAACTGAtaggaggagaagagagggatGAGACAGAGACTGACTACCCTCCCCCCACAGAGATCCTGGAGGCAGCTTGTAATGAATCCATTCCTGGACTTACAGGGGTGTCAAACTTCACAGTCTTCCTCTACTGTAACCTCTTTGATGGAAACGACGACGCTTTGGACACCGAGGCAGATCACCTGGGGCTGGACCTGCACTCCACCTGCTCTGATGCGGCCTGGTACCTCTCGGCTGCCGAGGAGGATTTCCTGTGGGTGCACGTGTGCAGCGAGTTCTTTGCTCACGAGTTCAATAACACCGTCTGTGCCAACTCCTCCTTCTGGTTGGAACGTGCTCACCAGGCTGCTGTAACCAAGGAGTACCGCATCCTCAATCAGTCCAGCATTGATGACCTTTGTGTGCATCTCTCCAGTGATGCCAGTGGAAGCTCTGCCTCTGAAGCCAGTGAGGATTGCTTGGTGCAACTGGGAGCTGGAGCTCTGAGAGCCAAGGACTTCAGGAGATGTTTTCTACCGAACAACTCGGACCTGATTGCGGCTCTGTGCAGCAATGAGAGCTCAGCCCAGGCAGGGAGCTGGGCGGCGGAGTATTGCTCCAAAGTGCACCACAATGCTTCTCACAGCGACCTCAGGGTGGAGACCTGCAAATACCATAAATGGACACTGGACGCTTTTGGAAATACTTCTCTCCTGGATCTATGTAAGGGTGTTGAGGGGCTGAGGGAGCACATCTGCCACAATGCAACCTTCTACCGGCAACTTGTAGTGGCTTACCCCTGGCTTTTAGACTACTGTGCTGAAGCAGGTGTGAAGCCAGGGGACAGCAAGTGTTTCCTGCAGAAGCTCTTTGACATGCTGCCTGCTCCCTATGACTTCGACACTTCCCAGCTGTGTGTGAACCCCGCCCCCTTCCTCCTGGATGCTCTCTATAGGTTGAGTCAGTGTGAGGGGCGGGGCGATGAGCGTGTGGGCTGGCTCAGGGCGGTGAGCTATGTGCTCCGTGTGCTGGACTTCGTGGTGGGGCTGTCGGCGGGGCTGGAGGAGGGTGAGCGGGAGGTGCGGCAGGGCCTGGGTCAGGCCATCCTGCTCTCCAGTCTCCTAGACAACACCTCCTTCTGGGCCACCCTCCGCCCCGGGGCTTCTCTGAGTGTGCTCCAGACTGTCGGTATCTTTCTCAGGAAGGAGCAGAACCCCTCCCTCAAGGAGGACCTTCTCAGCTGCTTCAGTCCTGTGCTGTGGGACCTCATCCAGAGGGAAGACAACTCCTCAGCCCTGAGAGTACTCTTCCAGGAGTACCTGCAGATGCCACGGGAAAGCATCCGCACTCTGCTGATGTCAGCGGAAAATGAGGCAGTGAAAAGGTTCCTGTCTCACATGCACCAGAGCTGGGACCAACTGCAGGTGGAGACCATTCAGGTGTCTCCAAGGGAGCAGCAGGCCATGGAAACAATGACCTCCGCCTTCATCCACAAGTTCCCTCGCGTCACCCCTGACCTCTTTGTCGACCTCTCCCAGTTCATCCCCTTCATGTCCATATCTGACATCATGAGCTTTCCAGCCTCCCTCTTGGTCAATGACAGTGTGTTGACAGCTATCCGGGTTCACAGCCCTGAGATGAAGTCGCCCCAGAAAAGAGCCTTTGTCAAGAGACTGCTGCAGTCCAATGTCTTCGGTGAGGTCTCGTCATGGCCACCCTACTTCCTCAGCTCCATCTTGCCTCTTTTACCCCACCTGCCCCTCTGCCACTTTCAGCAACTCACCACCCAGCAGCTTAGCCCACTAGTGGAAGTGCTGGGGAACAGCAGCCTAGACACCACTAGGGGGCACCACCTGCTGCGGACAGTGTTCAACAAGAGGAGGAACTTGACCAGCGAGGATGCACTGAGGTTGGGGCTGCTGCTGTGCTACATGAGCGCAGACGACCTGCGTCCTCTCCTGTCGGGCCCACCACTGCCCCGCCCCCTGAGGGACCGCctggcactgtgtgtgtcagagggGCTCACCAGTGGCAGCGGAAGGctctctcACTGGCTGCTCCAGGCTCTCCAGTCCTTGAATGCCAGCACACTGACCCCTGTAGAGCTGCCCCCTCTCCGCGGACTGCTGCCCCAACTCGGAGCATCCTTCCTGCAGCCGCTCTCCCCATCCCAGGTGCTCCACCTTCTGGCTCAACCAGGTGTCCCCAGCTTCCCTCCAGCACAGgCATATCAAATATTAGCTAAAATAACACAGAATATAAAtCTCAGTGTGGAGGGTGTGTGCCAGTTGTGGCCCCTGCTCTCAGGGCTCAGTCCCTCTGCTCTGCGCTCCCTGGTCAGGCCTGTGGTCTCTGGCCCCTCTTCCTGCCACTGCTGGGGCTCCCTGCTGCCTGAGCTGAGCCGGGCCCACGTGGCCATGCTGTATGACTCAATGCAGCAGGCCCTGGGGAATGTGTCAGAGAGCCTATCCCTACAGTCCCGCTGTCTGCTGCCCTCTGTCCCCCTGAAACACCTGATGCTGGAGGGAGATGTGGTCCTGAGAGACATCGCACTGTACAGGAACTTGCCCTGGTCCCACCAGCAGGCCCAGTGGCTTTTCAAGAAGATCcttcaaactgaaaacatcaCAGCAGAAACTGTATTATCCTTGGGCCGCATCGCAGGTGGAATGGACTGTGATTGGCTTAGATTCTGGGCCAATCAATCGGATTTCTCTGAGCTGCTGGGATTGGTCAGTGAGCTACCAGGAGGCATAAGGCCAGCCCTGAGAAAATGTGTCATTGAGGAGCTGCGCAAACAACCAGAAACAGATCTACGCCTTCTGTCCCCGCACTTCTCCCTGGGCCTGCCGCTGAAGATGATGGACAGGCTCCCTAATGCCTCATTTACGGCCATTCTGGAGCACATCAGGCAACACTTCACTGACTTCCTCCGGTTGCCGCCCCACAAACAGAGCGCTCTGGCAGAGAAGGCCCTCTCTGTCCTGGGAATCTCCCAGGAGGCAGAGATCTCGGGGGCATCTCTGGAGCTCCTGGGACCCCTGTTCCCCTTTCTGGACAGGGCAGTGGTGGGACAGGTGGAGCGGGAGGCCCTGCGCCTGCGCTTGGATGAGCTGAAGGGGTACTGCTTTCCCCGGGGCATCCTGCCTGAGATTGCCAGCATCCTGACAGAGAGGGTGAAGGAGATGGAAAATGCCGGCTGGCTGCTCTTTGCCCTCTCCTCTCAGGAGATTGGCACCCTGCCTGTGGAGGTGCTGAGCCCAGACATAGTGGAGCAGGCCCTGGAGAGTTTGTGGCGCTGGCAGGGCAGTGAAGTGGGCCACACCTGTGCCACcccacagggagagagggagaagagggagAAGCTCGTCCACAGGATCATCAGGGGCAACAGTAACGGCAAAAGAGAGCCAGTCCCGAGCTGCGCGGACATCAAGGGTACATTCCCCTCAGCCTGGAGCACGACTCAGCTGGGCCGAATGGGGGAGCAGGATCTGCGGCAGTGTGTGGACACCCTGGGCCGGGACAGTCAGCTCAGCCCAGAGCAGCGCCGAGCACTCTGGACCCGCCTCAAACAACTTTCTGGCCCAGTGAAAGCCATGAGGCCAGAGCAGATCCTGCAGCTGGGCTGTATCGTGACTGAGCTGAGTGAGAGGGAGCTGCAGGATATTGACCTGGCCAACCTGGGGATCCTGGCCCATCTGGGAGCCATGAAAGACTGGAGTCCAAAGAAGATGAGGGCGGCCGTGAATAGCTTCCTGAGGCACAGCCGACTAACACCAGAGGGGCTGGGCCTAACAGAGTTGGCGTCTCTTGGCCACCTGCTCTGCGGACTGAGTCCCCCTGAAATCGGCCGTCTCAACCCCCACACGCTCAGTGTGGCCGCTGTGTTCCTGCGAGAGCTGCACCTGCCCTGCTCGGAGCTGCAGTCTGAAGCACTGGCCTCTCAGCTCATGAGTGCCCAGGCCTTTGGGGGGGCCAGCTCGTGGGGCTCTGAGGTCTTTACTGAGATCGGGACTCTGGCAGCTGGGCTGCCGGACATTGTGCTGTCATCGTTGGTCAGGGAGCAGATAGAAGGCCTGACCCCCACAGCCATTGCCCTCATCCACCCCAGCAAACTGGCCgTGGTGCTGAGTGCGGCCCAGCTGTCCTGGCTGGGCCCTGAGCAGGCGGAGGCACTAACACCAGAGCAGTGGGCTGAGCTGGGCAGCGAGCAGAGGGTGGCCGTGGTCATGGCGCAGTACGAGGGGGAGACGGCCCAGGAGTACAGGGGTATGAACACGTCCGATGGATATACCAAGCTCAGTGTGGCGTTGGACCTCACCTCAGACTTGCCCAGTCGGTCCAGGTTGGAGACGTCGAAGGTGCTGCCCACGGCTGCTGTGTCCACACCCCCTGTGCCTCGCTTCTGGAGACGCAGGTTGTCCAGGATCTTGGGGAAGCGAGGgtcctacagagagagagacgataCTCAGTACACTAACACACAGCGGGCGGTCTCGCAGACGGTTAATGTGCACGCCAGCCCGCAGCCCTGTGCCCAGGTTGGAGGGGCAGCTTACATTGCTATGCTTCATTCAAAAGCGTTTACCAGATTCCACGGGCATCCGGCCAATCACGGGCCATTCCTGCACAGATCTCCACTCAGCCCGTTCAGAGCGTCCGACACCACGCGCTCCACCTCCCGGCGCTCCGCACGTGTGCAGGCAGGGGGCAGGCTGAGCCCACGGATGCTGCGCCCTGTCCGCACACGAGAGGACAGCACGTAG

Function

GO: NA

KEGG:

id description
K24636 STRC; stereocilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31615 lncRNA upstream 28444 24554268 ~ 24564852 (+) True G25209
TU31604 lncRNA upstream 93707 24491000 ~ 24499589 (+) False AMCG00007640
TU31603 lncRNA upstream 93707 24498934 ~ 24499589 (+) True AMCG00007640
TU31608 lncRNA upstream 102548 24484286 ~ 24490748 (+) True G25203
TU31607 lncRNA upstream 102875 24484286 ~ 24490421 (+) False G25203
TU31739 lncRNA downstream 196698 24817342 ~ 24861868 (+) False G25300
TU31738 lncRNA downstream 199455 24820099 ~ 24861868 (+) True G25300
TU31744 lncRNA downstream 258721 24879365 ~ 24911371 (+) True G25303
TU31742 lncRNA downstream 313835 24934479 ~ 24941580 (+) True G25302
TU31813 lncRNA downstream 332481 24953125 ~ 24953328 (+) True G25367
AMCG00007650 mRNA upstream 6926 24579131 ~ 24586370 (+) True AMCG00007650
AMCG00007639 mRNA upstream 19266 24572886 ~ 24574030 (+) True AMCG00007639
AMCG00007641 mRNA upstream 56488 24522465 ~ 24536808 (+) True AMCG00007641
AMCG00007640 mRNA upstream 93646 24491902 ~ 24499650 (+) False AMCG00007640
AMCG00007638 mRNA upstream 131891 24449322 ~ 24461405 (+) True AMCG00007638
AMCG00007653 mRNA downstream 73878 24694522 ~ 24704573 (+) True AMCG00007653
AMCG00007654 mRNA downstream 96292 24716936 ~ 24738397 (+) True AMCG00007654
AMCG00007655 mRNA downstream 122290 24742934 ~ 24761289 (+) True AMCG00007655
AMCG00007660 mRNA downstream 160713 24781357 ~ 24783125 (+) True AMCG00007660
AMCG00007657 mRNA downstream 164648 24785292 ~ 24793741 (+) True AMCG00007657
TU31514 other upstream 398815 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 1399775 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 2310338 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 3526513 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 5537163 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 3463178 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 3832365 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4382451 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5145184 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 10990472 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile