RNA id: AMCG00007654


Basic Information

Item Value
RNA id AMCG00007654
length 5546
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00007654
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24716936 ~ 24738397 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGCACGGGACGCGCTGCGCTGGGGAGGTGGCCGCAGTTGCTAACAATGGAATATGTGGAGTGGGCGTGGCCTACAATGCTAAAATCGGAGGTGTGCGCATGCTGGACGGCGAGGTGACCGACGCAGTGGAGGCCAAGTCCCTGGGGCTCAATCCTCAGCACATTGACATCTACAGTGCCAGCTGGGGCCCGGAGGATGATGGGAAGACTGTGGATGGCCCAGCCAAATTGGCCAAGGAGGCATTTAAACGTGGAGTCACTGAGGGTCGAGGGGGGCTGGGCTCAATCTTCGTCTGGGCATCGGGGAACGGCGGCCGTGAGAAAGACAGCTGCAACTGCGATGGCTACACCAACAGCATTTACACCCTGTCCATCAGCAGCACCACGCAGTATGGCAACGTGCCCTGGTACAGCGAGGCCTGCTCCTCGACCCTCGCCACCACCTACAGCAGCGGCGGCATCAATGAGAAACAAATTGTCACCACAGACCTCCGGCAGAAGTGTACGGACTCCCACACTGGGACCTCTGCCTCCGCGCCTCTGGCAGCCGGGATCATCGCCCTCGCCCTCGAGGCCAATAAAAATCTGACCTGGAGGGACATGCAGCACTTGGTGGTGAGGACCTCCCACACGGCCCACCTGAACACCGACGACTGGAAAACCAATGGTGTTGGCCGCAAAGTTAGCCACTCTTATGGTTATGGGCTACTAGAGGCCAGTGCCATGGTTTCTCTGGCCAAAAACTGGACCAATGTGGGGCCACAGCAGATGTGTGTTCACACCATGGTGTCACAGCCCagGAATATTGGGAGCCACCTTGTGATCTCCAAGACTGTAGACGCATGCATTGGAAAGCCAGAGTACGTGAACTCTCTGGAGCACGCTCAGGCTCGACTCACCTTGTCCTACAATCGCCGTGGAAACCTGGCCATTTACCTGATCAGCCCCAGAGGAACTCGTTCGACGCTTCTGGCTCCTAGGCCTCACGATTATTCCTCTGAGGGCTTCAATGACTGGGCCTTTATGACAACCCACTCCTGGGATGAAGACCCCCGTGGGGAGTGGACACTGGAGATCGAGAATACGTCTGGAGCCAGTGACTATGGCACACTGACCCAGTTCACCTTGGTTCTGTATGGCACTGGCCCAGGCAATGTCTCCAGGCTCGACTATAGCCAGTCTGCTAATGGCAGCTGCAAAACCTTCAACATGGAGCAGATCTGTATAGagtGCAACTCTGGCTACTACCTGTACCAGCAGGACTGTGTGACGGAGTGCCCGGCCGGCTTCACCCCTGGGTCTCAACAGTCGGACTACCCTTTGGAGAACTGGGTGGAGCCCCCCATCGTTCCCTCCTGCCTGCCCTGCCACCCCTCCTGCCTGACCTGTACAGGCCTGGGCTCCTCTGACTGCCTGTCCTGCCCACCACGCAACCACCTGGACCCTGTCTCTCACATCTGCCTGCACCAGAACCAGATCCGTGAGTCCCCCAGCAGCACCACCTCGGAGCGCGACCGCAGTGAACCCGAGAGCTCGGCAATGCCCGTAACCGTGGCAGTGCTCAGCTGTGCCTTCATAGTCGCCACCTTCGTGGGAGTCTTCATGCTTTTGCAGCTGCGCTCTGGCAGCACCCCCTGTAGTGGACAGACCAAACTGCACACGCTGGAGTCTGTGGGGGGCATCCGCGTAGGGTTCGGCATCGGCCGGGGAAGGGTGATCTCCTACAAGGGAATCCCCTCGGTGTGGAGGGAGGATGGCGGTAACTCGGAGTCGGAAAATGAGGAGTTCGACGGCCACAGCGAGAGGACTGCCTTCATCAAAACGCAAAGTGCTCTTTAACCCGCCTCCACTCACAGCGCCGCACCTCACCTCGACCCCCTTTCTCCGATGGACCTTTTTAATCATCtgtgttcctgtttttcttGGTGACCTGGTGGGAGTGTTCACGTGTTCTCTGACTTGGGGAGTCGCACATTTATGTTATTGTGCTCAGTGTCTTTTTTCAGATCATACTGGGGGTAGGgacagggaggggggggagcACTTTCTTCAGAAGGTGTTGGAGTTTCTTCTCTCCCAGTCTCTTTTCACATCTCGGGTATCAACAGGTTTTTGTCAGATATGCTAAAGGATGTCTGAGTACCTAGGTTATCCACAACTAAaatttatttgcaaaataaacataaattattatggtttcctttttatttttattttcattttttttctcctctctgtattttctttccttttcctttggAGCTGTGCAGGTGATGCCTCGCTGTACTTTGAGCACTGCACACTTATGTGATTAAAAGTAAAGCTGGTAAAGCAGAAGGTGGTCACAGGATGGGCAGGCAATGACAAGTCCTCATCCTCAACATCTAATCCTCATTTATTCTGCTTTGCCTGCCCATACTGCTTCAATCACAGCACAGGGATTGTGTACTCGACTGCACTGTGTACCTTCCTGATAGCAGCTTGATTTAGTTTGCTCTCTCCACAGAGAATTAGATCGCAGCTCATCTAGGTgattttaccaaaaaaaaaataataataataaaacacctcCCCTTGTACATCTAAGAGAAAACTGCTGCAGTCACCCATTTGTGTGAAggataatttataatttattctcTCCTAATACTGGGTGCTCACCAACTTCAGTCCAAGGTGTGAGTGAAAAGGCAGTGTTGGCCCATGTTCAGCACTCCCAAATCCCCAGGTCGGCTTCACTTTATTATTCAAGCTACTTCATCACTCCTATTCCACAGCGTGCACATTAAGAAACAATCTCATGAAGTCAGCATTACTAACTATAAACTGCAGTGACCACACACGCTCACACGTCTCCATCAGGGGAACCACGTTGAATACCGGTGTCAGGGTCTCAGTGCCATCCTAGCAAGAGCTAAAGGAATCGAGCCCTTACTATTCATTGGCTTCCAGAGAAAAGGGGCCAGAAAAGGTTACTGCTGCTTTTGaaattagattgttttgttttccccccccccaccccttccctAGTGAAAGGGCTGAGGCTTGATTGCAGTGCGATGTGACGCACTGTCTGGCCTGACAGATGCTAGCTCTGCGTCTGTTCAGGACAGCAGAGTTGTGATTTGAAATCACTGATGGACTGTGGGTATTCTCCGTGATGGTTTAGTTGAGCATTTAGTTGAAGCTTTGTTCAGGCGTGCAATACCAGGGTCACCCTTATCGGTTGTCAAGGCTGGTGTGCGGGGTTATAGGTGTTTAGGGGAGTCTGAAGGACATGTGTTATTTTAACCAGTGTGCATGCCATTTGAGTGTGGGGGGAAGGAAGGTTTCAAACGGACAACACTGAACAGCGCCGGAGTGACTGAGGTTCAATAAAGTGGATTTCATGCACTGCAGAGCAATTACAATAACACTCACGGTGGCAATCTTCAGGCGACTTTTCACCGTGCTCTGTGACAGTACGGCAGTGTGCACTCTGAGTCTCTGACAATCTTCTCGTTTGTCCTTTGAGCCAGTCAGAGACGGGAGTGCCATTTCTCTCTCGCTTTTTACCTTGTGGGTTGTTGCCCTTTTGAAATGGGTTGTATTATGTGTGTGCAATAAGTGGAACATACTGCAGAAAGCATTCATATCTTATGGGCAAGATTCGTGGCCATGTGCTCGAGTCCCTTGGTTCTATACGTAGGTTTTGTTCATggcttgtgctttttttttttttttttccttctacagTTCATGGTATAATTTTAAgagctgaaatatatatatatatatatatatattagatcaGATTTTAATACTGCCATTTGGCTTTGAAGAGCTCTCTTTTGAgcaagaataaaatgtatagagTTTATAAAATGACCACAGTCTCGCCATTTACAAGGAAGTTGAAACTATAAAATGTGTACTGAAACCGTTGACAAGTGGTTTCATTCAGAGTGgtgttttgaatttgtattcttATCGCcctaatgaaaaatgtatgtagttGAAATCTTGTTTGCAGAGTATGAGGGAAGGTAGCGAGGGTTTCAATTTTCCTGGCTGCCTGGCTATTGCTGTGATTTTGGGGGAAGTCTGCTCGGCCTGTGTCTATTCTCTCGCTGGAAGCCCAAGCCGAGTACTGTCCTGCCCCCCGTTATTTTACCAGTGTCACTCTTTGGCATTCTCTCAATGTGACAGGCGGCCCAGGCTGTCACTTGCCCGCACACTCAGTGCTctatctctcctctctccagcTCCTCTGGTCATCCCCAGCCCGTGCTGCAATTCGCAGTAATGAAAGGTGCAGTGATTCATGCCGCGCAGTAAAGAATTCATGGGAGTCGTGATGGTGGCTGTCCTAAACTGTCAATCTTGTGTAATCAAATGGGTGCATAAAATAGCCATCAACTTCGCTTAAACACATGTCTGCATGTCATTAATCAGATTGCATAAACCCATTGTGATCTGGGCCGAGTGGACTCAGGGTGCTGTGGTGGAGGGATGAGGGGGGGAATTAGTTGTGAACaatgcaattgtttttcttgcctCAGTGTCACCTCACTTATTtatccccacccccaacacacaaacagatggTCTGCTGATCCAGCCTGTTATAGCTGAAAGCACTGAGCTCCACTACATCCACAATTTGTGTGAATTCTTAATACTAGCTTTCACAAGAAGCAAGTTCCACATTTGTGGCAAGAATTTACGGTCATGGTTTTGAAAGGTGCAATCTTCATGCACTTGCAAATTCCTACACAGTCATGAATATACACACGCTTTACTATTCCTTCAGAATGTCTGCCAATTTCCAAAGATATTTTTAACTTCATTGTTCAGCAATTTCACAGAGCTTAATATTGACCCTTAAACTATATTCATTGAGTGAACTGAGCTAAGACATGGAATGGTGTGTAACCGTCTGACTACCAATCCATAGAAATTGATAGAATGGTAGTCTAATGTTTGCACGTCTTCCATCTTACCCGAGGTGAATTGGCtggaacttttatttttctctaaatTGAAACAGTCTCTAATAGACTCTGAAAAGATATCGCCAAGTATAGTTTAATGGACAATCTGTATTAAACTAATCTCTGAATCATATTGTTTCAGAGAAAGGGTGCGAGTACTTTAGACTGTTTCTCTGGTAATGTGATGACATCGAAGACACGGCAACATGCAGCATATTGGATTAGTTGAAATTAATAgtccagttgtttttttgtttagtttttttcttcctctctccaaatgtgtttacaaaaaccaaaacaatctgaaagGCCTCCAATAGCCTCCATTCTCCATGCAGTGTGGAGGGGTGCTCTTGCTGCCATCTCATCACTACACTCTTGGGATGGCAGCGGGGCATCGCAGAGCATTTTTACAAGAATGTCTCGTCTCCCATTAGGGTGGGATCTCGCACTGATGAGGATTGGCAGTGGTTTTCTGTGTGAGACTAATGATGGCTCTCGCAGCAGCAGTGTGCTGTACATAGACGCGCATCATCCTCACAGAccgagacccccccccccccccccccc

Function

GO: NA

KEGG:

id description
K01349 FURIN, PCSK3; furin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31615 lncRNA upstream 152084 24554268 ~ 24564852 (+) True G25209
TU31604 lncRNA upstream 217347 24491000 ~ 24499589 (+) False AMCG00007640
TU31603 lncRNA upstream 217347 24498934 ~ 24499589 (+) True AMCG00007640
TU31608 lncRNA upstream 226188 24484286 ~ 24490748 (+) True G25203
TU31607 lncRNA upstream 226515 24484286 ~ 24490421 (+) False G25203
TU31739 lncRNA downstream 78945 24817342 ~ 24861868 (+) False G25300
TU31738 lncRNA downstream 81702 24820099 ~ 24861868 (+) True G25300
TU31744 lncRNA downstream 140968 24879365 ~ 24911371 (+) True G25303
TU31742 lncRNA downstream 196082 24934479 ~ 24941580 (+) True G25302
TU31813 lncRNA downstream 214728 24953125 ~ 24953328 (+) True G25367
AMCG00007653 mRNA upstream 12363 24694522 ~ 24704573 (+) True AMCG00007653
AMCG00007649 mRNA upstream 96292 24593296 ~ 24620644 (+) True AMCG00007649
AMCG00007650 mRNA upstream 130566 24579131 ~ 24586370 (+) True AMCG00007650
AMCG00007639 mRNA upstream 142906 24572886 ~ 24574030 (+) True AMCG00007639
AMCG00007641 mRNA upstream 180128 24522465 ~ 24536808 (+) True AMCG00007641
AMCG00007655 mRNA downstream 4537 24742934 ~ 24761289 (+) True AMCG00007655
AMCG00007660 mRNA downstream 42960 24781357 ~ 24783125 (+) True AMCG00007660
AMCG00007657 mRNA downstream 46895 24785292 ~ 24793741 (+) True AMCG00007657
AMCG00007659 mRNA downstream 57052 24795449 ~ 24799006 (+) True AMCG00007659
AMCG00007658 mRNA downstream 66111 24804508 ~ 24805488 (+) True AMCG00007658
TU31514 other upstream 522455 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 1523415 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 2433978 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 3650153 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 5660803 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 3345425 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 3714612 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 4264698 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 5027431 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 10872719 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00065585 True 2790 mRNA 0.54 15 NC_007118.7 14005111 ~ 14203365 (+)
grasscarp (Ctenopharyngodon idella) TU360160 False 2424 lncRNA 0.51 13 CI01000105 1668307 ~ 1781453 (-)