RNA id: AMCG00007656


Basic Information

Item Value
RNA id AMCG00007656
length 6390
RNA type mRNA
GC content 0.53
exon number 24
gene id AMCG00007656
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24761918 ~ 24779617 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTATATCGGGCTGGGATTTCAAAGAGACAGATAACGGTGGGGCCTTGTAGGCTCAATATTGATGTCGGGAGCAGTATGTAATATTCTTCCTGTAATTTGCAATTCTTTCCTGTACCTTTCGAAGGAAATCAGGGTCCAAGTGGATACAACTCAGAAGAACACTTGGAAGTATTGAAGAACTGTGGTCTGAAAAATGCTGTTGCGGTTTATCGCGGCCCCCTAATGCTCTGACTTTGTGGAAGTAGAGAGCTCTCCGCAAACAGCTGCCGACGCCAGCTTCTGAGAAGAGGGTCATGGATTGGAAACAGAGGAACAAACCACTCCCagctgcattgttttatttccgAAACCGATAGATTGCGAACCTGACTTCAGTCATTTGTGTGCCTGGATTTCTGAAGTGTAGTGGTTTACCTCTCCCCACACACTtgacattgatttttattttttctttagaaaaaaaaagaaaaaggcttctatcatttatttaatcttcatgGACTGCAATTCTAAATGCATTTGTGAGTTAAATACAGAGTGAAAGAAATAAGACTATTTGAAGTGCATTGAGCAGGGAGATGCTGAATGTTGATTGAAAGGCTTGAACTATAGAGAcctagagaaagagagagactctGGTAGAGACAATGGTGATGTGGGGGGAAAGGTGCAACAagatttttaaaacactgtttctGACCTCGTTTACTTCTAAAGACAACCCTTTGTAATTAGAGGAGTTCCTGCTTTCATTATGTGTTTTCCAGAGTTTTGATCAATCTGTCTTCAGGGGCCTTGAGTCATCAGGGACAGATGGCAGCCTAGTAAGTGTGCCTCACGTGTTGTTTGCTAGCATTGGAAATAGAATCAATTTTGGGATTTACTGGAAGACCGGTTCGGTTGAAAATAAGTAGAGCTTTTAATGCAAAGTCCTCCTTCCTAGAAGGCTAAGTAGCTGTGGCATGCTGCTGGCTGATAGGATTAACACCCTGTTTGATTTAAACACCACAGCGAGGTACAGCACATGCCCATCTACACTTTCTTTAGAGGGATAGAAACTTAAATCTAAGTTGAGGCTTGCCACTCATAGTGTTGGTATCTAGTAGTGGATCCCTCCCTTCCCCTGGCCTCAGTACTGTTCCCTATCTGTGACAGATCCAGAGTTGTGGGTATAAATATCCTCTCTGGCACATCCATAAACTGAGATTAACCAGGGTACCAGATTCTCCAACACATACAGAGTcccaagaaaaaaaggaaagaaacatgTCTGTCAAGTCCGAATGAGAGAGTGCATTTGAAAACCTGAGCCGATTCCCCCATGAAGCAGATAGAGCAGAACGCAGCCAGGTCCAATAGATTTAACACCTTGGAGAGCACCCGGGCTAACTAAATACCCCGTAGATTTGAGCCAAATCATTTTACATTCAGCTCTTGTGTGAACTGGCTGTGCTCACTCGATTGGCTTAGCCTGAGCAGCCAAATAAGAGACTGGGAAATTTGGATGTGTTAAAGGATTAGAGACATCACAAGGTTGGATTGGTTTAGCAAAGACAAGGGGATCACACACCATGTTACAGGGACAATAGGCTCCCTGTCTTGGCCACTCTGTTGGAGGACTGTTTTTTGGCTTGCGGGGTTTGGATGATTAAATATAAGGGCCGCAGTGTAGAAGCCCGGGGGTTGTTGAAGTTTGGCTGTAGCTGTCATAGAGCCTGCCAGTGGCATCTCACCAGCACTTTCTGTGTCTTTGGTGACTGCAAGCCCAAGTACACGGGCTACAGCATGGTCTGGCAGTGCAGAGGCTTTCAGCAGTGTGACTGAGCAGACTTGTTTGTAACGTTCGAGCCCGGTGTTGCATGGTTGCCTGCGGCATCTCTGTGCAGCTGTCAAGGACGACCAAGCTTGTTGTGCCTGGACTTTTACAACCCTGAGGAGAGAGCTGCTGCCGAGGTCTGAGGGCTCCCGCCAGAACGTCCTGGCTGcagaatgaaactgaaaaagcaaGTGACGGTGTGTGGCGGGGCCATCTTCTGTGTGGCTGTCTTCTCCCTTTATCTGATGCTGGATCGAGTCCAGTACGACCCGGCCCGCCGGCAGAACTCTGGCAACTTCCCCAGGAGCCAGATCTCCGTGTTGCAGAACCGCATTGAACAGCTGGAGCAGCTGCTGGAGGAGAACCACCAGATCATTAGCCACATCAAGGACTCGGTGCTGGAGCTGACGGAGACAGGAGTCGGAGCCCCTGGGGCACAGCTGCCATACCGCAACCCCAATGGCTCTTGGGTGGTGCCTTTCGATGGGCGCCCTGCCTTTCTCTCTGTTTCACCACAGGACTGCCAGTTTGCCCATGGGAGACGTGGGCACAAGACAGATCTGCAGATGCTGGATGTGTATTCGCTGCTGAACTTCGATAACCTGGATGGCGGGGTGTGGAAGCAGGGCTTTGAGATCACCTACGATCCGGGCGAGTGGGACAGCGAGCCCCTGCAGGTGTTTGTGGTGCCACACTCCCACAATGACCCAGGCTGGATTAAGACCTTTGACAAGTATTACTCGGACCAGACCCAGCACATCTTCAACAACATGCTGGTCAAACTGCAGGAGGACCCGCGGCGCAAGTTTGTGTGGTCTGAGATCTCGTTCTTCGCCAAGTGGTGGGAGAGTGCGGACTCGCAAAAACGAGAGGCCATGCGCAGGCTAATCCTGGGAGGTCAGCTGGAGATGGTGACTGGGGGCTGGGTGATGACCGATGAAGCCAATGTCCACTACTTTGCAATGATTGACCAGCTCATTGAGGGCCATCAGTGGCTGGAGAAGAACATAGGGGTGACTCCGCGCTCTGGCTGGGCTGTTGACCCCTTTGGCCACAGTGCCACCATGCCCTACCTGCTGAAGAGGGCCAACCTGACCAGCATGCTGATCCAGAGGGTACACTACTCCATCAAGAAGCACTTGTCTGCCACCCGCAGTCTGGAGTTCATGTGGAGGCAGGCCTGGGATCTTGAATCTGGAACGGATATCTTCTGCCACATGATGCCCTTCTACAGCTATGATGTCCCCCACACCTGCGGCCCTGACCCCAAGATCTGCTGCCAGTTCGATTTCAAGAGGTTACCAGGTGGCAGAGTGAACTGTCCTTGGAAAGTGCCCCCCCGCGCCATTGTGGAGGCAAATGTGGCTGAGAGAGCATACCTCCTTCTGGACCAGTACCGGAAGAAGTCCAAGCTCTACCGCAGCAAGGTGGTCCTAGTTCCGCTGGGAGATGATTTCCGCTATGACAAGGCACAGGAGTGGGACCAGCAGTACCTCAACTACCAGAGGCTGTTTGACTACATGAACTCCCACCCCGAGATGCACGTGCATGCCCAGTTCGGGACGCTGACGGATTATTTTGACGCAGTCTACAAGGCGAACAATGTGGCGCAGGGGGCCCGGCCGCCTTCCTATCCCGTGCTGAGTGGAGACTTCTTTGCGTACGCCGATCGAGAGGACCACTACTGGAGCGGTTACTACACCTCACGGCCTTTCTACAAGAACATGGACCGTGTACTGGAGTCCCATCTCAGGGGGGCTGAGATCCTGTTCAGCCTGGCACTGGCTCACTCTCGCCGGGCTGGCATGGAGGGTCGCTACCCCACGTCTGACTACACTTTGCTTACTGAGGCCCGCCGCAACATCGGGCTCTTCCAGCACCATGATGCCATCACCGGCACCGCCAAGGAGGCTGTTGTCATTGACTACGGTGTCCGGTTACTGCGTTCCCTGGTGGGTCTCAAGAGAGTGATAATAAACGCTGTACATTTCCTGATCCTGAGGAACAAGGACAACTATCACTTCTACCAGACAGAGCCTTTCCTAGAGACGGATGAAAGGCGCGCCACACAAGACTCCCTACCCCAGCGAACGCTCATCGAACTGGACTCCACCCCCAGGTTCCTGGTGCTATTTAACCCTGTGGAGCAGGAGCGGCTGTCTCTGGTGACAGTGTTGGTGAACTCGGCGCGGGTTCGGGTCCTGACGGAGGAAGGGCAGACCATCCCTGTCCAGCTCAGCGCCCAGTGGAGCTCCATCAGTGAAATGAGCAATGATGGCtaccagGCCACCTTTGCCGCCCGTCTCCCTGCCCTGGGCCTGGCGGTGTTCCAGCTGTACGACTCCTTTGACTCCTCGCTGACCCTGCACTCAGACACTGTGCTGCGGTTGAACGGGCATAAACTGGCGCTCCGCAGCCTGGACCCCCTGCCCCTGCGCAGCCTCCCCGCTGACCAGAACACCTTCTACATCCACAGCCAGAGCctacagctgggtttttctGGTACCACCGGCCTGCTGGAGCGCATCAAGCTGAAGGACGACCAGCAGGAAGTGAAGCTGCAGATGGAGTTCCTGATCTACGGCACGCGGCCTTCCAAGGACAAGAGCGGCGCCTACCTCTTCCTGCCCGATGGCAAACCCAAGCCCTACACGCAGAAGGAGCCCCCAGTGGTGCGTGTGGAGGAGGGCCCCCTTTTCTCGGAGGTGGTGGCGTCCTACCAGCACTTCCAGCTGTCAGTCCGCATCCACAACCTACCAGGAGTAGACGGACTCTCTCTGGACATCACCACCATGGTCGACATCAGGGACCAGGCCAACAAAGAGCTGGCCATGCGGCTGGTCACTGACATCCAAAGTGAGGGCACCTTCTTCACAGACCTCAATGGCTTCCAGATCCAGCCGCGCCGGTACTTCAAGAAGCTTCCAATACAGGCCAACTTCTACCCCATGCCCAGTATGGCCTATATCCAGGACAGCCAGCACCGGCTCAccctgcacacagcacaggcCCTTGGAGTGTCCAGCCTGGATAACGGTCAGCTGGAGGTGATCCTGGATAGGAGGCTGATGCAGGACGACAATCGTGGCCTGGGTCAGGGGCTGAAGGACAACAAGAGGACCGCCAATATGTTCAGGATCTTGCTGGAGAGGAGAGCCAGCATCAACAAGGTACCCCAGGAGTTCGAGTGCCCCACGAAACCCTCGCTCTTTCCACCCGGGGCGCATTCACGGGCTCTTCATGCGGGCTTTCTTTCCACAATCGCCTCCTTGTTTCACTCTCTCATCTCACGTGTCTTCGGAGGCGGCGCCCAAGAGGTGCAGGACAGCCAGCCGGTCAGCTTCCCCTCGCTACTCAGTCACATGACCTCAGTTTTCCTGAATTCCGGAGTCCTGGCACTGCCGGTGCTGCCAAAGAAGGGAGGGATACCACCGCTGCGCTCTTTTGCACCGCTCTCGGGCACGATGCCATGTGACTATCAcctgctcaacctgcgcaccattcAGAGCCAGAAGGAAGAGCAGGTCCCTTCCCCCGATGCCGCGCTGCTCCTCCATCGGAAGGGCTTTGACTGCGGCCTGGAGGCCTGGAACCTGGGCTTCAACTGCACCACCACACAGGGCAAGCTGTCAATCTCTGGGTTGTTCCAAGGCCTGGATGTGCAGTCAATTCACCCCATGTCCTTGTCCTTAATGTACGCTGGGGCCCCTCTTTCCAATGGCTCTCTCATCAGACTGGATCCCATGGAGATCTCCACCTTCAGGCTGAGACTCCGCTAGGCCCCCTTCCAGCCACGAGGCCTGAAGACACCCTGGGGGCCACACTGGATCCACTACTACCAGCTATTCTACTTGGGATGGCTGCAAGAGCCACTGAACTGGAAACATACTGCTATACTGTGTGTCTATATACATGCATATCAATTGGACCTTTCAGTGTGCATGGGTTTCGACAAGACAGAGCCTGTGCTGTAGGAGTGTGCCGGTCTGTGCCACACCTCTGTCCCCTGTGGTACGCACTGCTTTATCATCAGTACCGGCACAGTACTGAGGCTGCACCTGggagaaattaaactgattcaTGATGGCACGTAGTCCTTTCATAATGCCATCTATAGCCAGAGACCGCGGGAGGTCAGCGGGGGAGTTCGGTAGGGCGCTCCTGTGAAAGGAGTGAGGACAGACGTGTCAAGTCACTGCCTTCCCTCTCGCCCGGGAGAGGGTTGTGTCCATCACCCCCACAGTGGCACTATGCGGAGTATTATTTTGCAGTTctgctttaaaattaattgactGATACTGCCCCCCTCACCACCCCCACACCCTGCGATAGACTATCTTTAAACTGTACAATGTTCCTGTTCATTTTTCACAGGACATGGACACTCTGATAGGGGACAAATGAACTGGAACTcagcctttattattattattattattattatcatcattacatCATTACCATCCAATGCAATATAAAATTTGGAGATGTGCATATAGTTTTTTCTACTGTACATAATCAAGCgttttcattttgacaaagctatttaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K01231 MAN2; alpha-mannosidase II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31671 lncRNA downstream 219760 24498365 ~ 24542158 (-) True G25248
TU31655 lncRNA downstream 254099 24433080 ~ 24507819 (-) True G25239
TU31571 lncRNA downstream 393545 24368169 ~ 24368373 (-) True G25177
TU31570 lncRNA downstream 407608 24350030 ~ 24354310 (-) True G25176
TU31569 lncRNA downstream 414499 24347099 ~ 24347419 (-) True G25175
TU31821 lncRNA upstream 202317 24981934 ~ 24982139 (-) True G25375
TU31834 lncRNA upstream 209228 24988845 ~ 24989054 (-) True G25387
TU31874 lncRNA upstream 428157 25207774 ~ 25245930 (-) False G25415
TU31876 lncRNA upstream 428157 25207774 ~ 25247379 (-) True G25415
TU31882 lncRNA upstream 473099 25252716 ~ 25256361 (-) True G25421
AMCG00007651 mRNA downstream 116554 24629506 ~ 24645364 (-) True AMCG00007651
AMCG00007652 mRNA downstream 137445 24614500 ~ 24624473 (-) True AMCG00007652
AMCG00007646 mRNA downstream 191621 24563795 ~ 24570297 (-) True AMCG00007646
AMCG00007642 mRNA downstream 199462 24559055 ~ 24562456 (-) True AMCG00007642
AMCG00007647 mRNA downstream 211694 24546532 ~ 24550224 (-) True AMCG00007647
AMCG00007662 mRNA upstream 20223 24799840 ~ 24802378 (-) True AMCG00007662
AMCG00007661 mRNA upstream 26174 24805791 ~ 24810467 (-) True AMCG00007661
AMCG00007666 mRNA upstream 154691 24934308 ~ 24945796 (-) True AMCG00007666
AMCG00007668 mRNA upstream 187255 24966872 ~ 24979337 (-) True AMCG00007668
AMCG00007667 mRNA upstream 209895 24989512 ~ 25006830 (-) True AMCG00007667
TU31562 other downstream 493997 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 789253 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4289214 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 4430107 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 4838765 19915146 ~ 19923153 (-) True AMCG00007487
TU31883 other upstream 484715 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 851178 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 10089818 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 12460472 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12715294 37494911 ~ 37499392 (-) True G27416

Expression Profile