RNA id: AMCG00007661


Basic Information

Item Value
RNA id AMCG00007661
length 2080
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00007661
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24805791 ~ 24810467 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCATATGATGTCCGTGCTGTGGTTTCTTTACTTTGTTTATagattttcacaaaataaatattatgagACATAATCTAATCAACAGAGATTCGAACCGAAAcgcagtaataataattgtagatGTTGTAATAGTTATAACAAAGAGAAAGAGGacagaacgagagagagagagggatgtcGTTTGTTgcttattaattgttattatttattttattaaaaagaatatGGAAGGGAGGGCAATCTGAGCTGTTCGATATATAGGAGAGAAAGAGTAGccatgttttacaaaatgttgtaGTGGATCTTAGtgtatttgtttactgtatatttctcaatcaaaataggaaaaataagaCCCGGCATGACAGCATttcagcaaaacacaacaaatagtAAGTACTGCTTttagtaacagtagtagtaatTATAATATAGACAGATATAATTTAAGGTCCCATGTAAGGCATCCAGTCGGTGTTCTCTTGATTTTGGACAGTCAAACCTCCCAGGCGCTGGGAAGGGCTGCTTGAACACATGCCAGTGAAGGCACTTTTGAGATGGGTGTGAAAACCTGACGGTCCTCCCCCTCATGGCGAGGCTTGTGTATCCAGGTGGCGGAGCTGCCTGGCGACCCAACAACAGTAACACTGGTGTAGAGGAGGACGCGCTCCGGGCATGGGGAGAATGCTTAAATCATCCATCAGACATAAGAAGCCACCTCTTAGCAGCCATTCCAGCACAGcCAGAGATGTAGGGAGCAGTCAGCCTGTGGTTTATCTCTCTCACTCCACTTCCAAAGGGAAGCCCTTCCACACAAAGTCTGGACATATAGATAGCCAGAGATACAGGGGACACCTGCTGCAGGGACAGAAGCAATGGGCTTCAGAGCAACGGGACAAAAAGCGGCAGTCACTactggagctggaggaggctgGGGGCCACAGGAACCCCTGGCAGCCCCTGGCACTGCAGGCCTCAAGTGGGAGTACAGGCCTGGTCCTGCAGAAGGATGCTACCCAGGGGAGTGTCTTCCAGGAAGCAGCAGAGATTCTTGAGGAGCAATTACAACAGGGCTACCAGGAGGAGGCACTGTTACTCAGAAGGTCTCTGGAGAGCATCAGACAGCAGTATGTCATCAGACTGCAGGGGCTGGAGTCCGAGGTGCGCACAGCGGAGCGGGAGAGGGAGCGTGCCCGGCGGGAGAGCAGGGCGGCCAGAGCGGAGCAGCAGGCTCTGCTGCAGGAGCATGGGCAGCTGCTCCACACGCTGCGCAGGGTCAGGGAGAAGCTGGAGCAGCAGGAGGTGCACAGGAGACAATACACCAGGAACCAGGAGGCTCCCCCAGCACTGCACAAAACCAGAGGGAAACAGGGGAAACATCACCCACCTCACTGACCAGGACACTGACCTGTACTTTATTCTGCTCAGTTAACTTGTCAAGTTCTGTATATTATGCATATAcactaattgtttgtttttacaactAGCAGCTCAGATGGATAGTGCACATTacatactgaaatatattatgTTGTACAATTTCATCCACTATTTTACACCCTGTCCCTTTTAAGAATTatgtttgttaaacaaaatatgaaaatagacccgacatttaaaacaatacaattcataataaataattcaccaAGAAGTTTAAATGGCActttaattttcatattttccccACTGTCCTGCTTTTTGTTCCAGttcagctctcaattacttaattgaaaccttaatttaactaataagtttgtttaatttgatggtTAAGCTTAAACCGTTTCAggattaaacttttaaaatctccaATTTATCAAAATTATTCATTAACTCTGAGTTAGGTTGAAACACAAATTAGAAGGACTCTGGTTCCCCAGGACAAGGATTGAGAACCACCGCTTTagaaagacaaaatcaaaaggCTTTGTTGCCTCCACTGGGCAATATTGTCTCTCATTTTCATTCTGGTTCAGTTACAAACAGAAGGCCAACAAGCAAAATCTTATGAATGCTATAGATCTATGttattactgcagcacactacgacgactactactactactactactact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31671 lncRNA downstream 263633 24498365 ~ 24542158 (-) True G25248
TU31655 lncRNA downstream 297972 24433080 ~ 24507819 (-) True G25239
TU31571 lncRNA downstream 437418 24368169 ~ 24368373 (-) True G25177
TU31570 lncRNA downstream 451481 24350030 ~ 24354310 (-) True G25176
TU31569 lncRNA downstream 458372 24347099 ~ 24347419 (-) True G25175
TU31821 lncRNA upstream 171467 24981934 ~ 24982139 (-) True G25375
TU31834 lncRNA upstream 178378 24988845 ~ 24989054 (-) True G25387
TU31874 lncRNA upstream 397307 25207774 ~ 25245930 (-) False G25415
TU31876 lncRNA upstream 397307 25207774 ~ 25247379 (-) True G25415
TU31882 lncRNA upstream 442249 25252716 ~ 25256361 (-) True G25421
AMCG00007662 mRNA downstream 3413 24799840 ~ 24802378 (-) True AMCG00007662
AMCG00007656 mRNA downstream 26174 24761918 ~ 24779617 (-) True AMCG00007656
AMCG00007651 mRNA downstream 160427 24629506 ~ 24645364 (-) True AMCG00007651
AMCG00007652 mRNA downstream 181318 24614500 ~ 24624473 (-) True AMCG00007652
AMCG00007646 mRNA downstream 235494 24563795 ~ 24570297 (-) True AMCG00007646
AMCG00007666 mRNA upstream 123841 24934308 ~ 24945796 (-) True AMCG00007666
AMCG00007668 mRNA upstream 156405 24966872 ~ 24979337 (-) True AMCG00007668
AMCG00007667 mRNA upstream 179045 24989512 ~ 25006830 (-) True AMCG00007667
AMCG00007677 mRNA upstream 512621 25323088 ~ 25334806 (-) True AMCG00007677
AMCG00007678 mRNA upstream 528895 25339362 ~ 25355884 (-) True AMCG00007678
TU31562 other downstream 537870 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 833126 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4333087 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 4473980 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 4882638 19915146 ~ 19923153 (-) True AMCG00007487
TU31883 other upstream 453865 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 820328 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 10058968 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 12429622 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12684444 37494911 ~ 37499392 (-) True G27416

Expression Profile