RNA id: AMCG00007662


Basic Information

Item Value
RNA id AMCG00007662
length 399
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00007662
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24799840 ~ 24802378 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAAGATCCTCACACTACCAGAGCTGAAGTCTAATCCGTTCCGAAAAAGGATTTGTTCTGTGTTCTCTACCTCTGAAGACAAAGATGGCAGCTTGACTTTTGAGGACTTTCTGGACCTTCTGAGTGCCTTCAGCGACTCGGCCACCCCTGAGATCAAATCTCACTATGCCTTCCGCATTTTCGACTTTGATGATGACGGGACCCTGGACCGTGGAGACTTGGAGAAGCTGGTCAACAGCCTGACTGGAGACACCGCAGACACGCGGCTCACCCCCGAGGAAATGAAACAGCTCATCAGCAACATCCTCGAGGAGTCCGATATCGATAAAGACGGGACGGTGAACCTTTCAGAGTTCCAGCATGTCATCTCAAGCTCTTTTAAGATCGTGCTGTGA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K17259 CIB1; calcium and integrin-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31671 lncRNA downstream 257682 24498365 ~ 24542158 (-) True G25248
TU31655 lncRNA downstream 292021 24433080 ~ 24507819 (-) True G25239
TU31571 lncRNA downstream 431467 24368169 ~ 24368373 (-) True G25177
TU31570 lncRNA downstream 445530 24350030 ~ 24354310 (-) True G25176
TU31569 lncRNA downstream 452421 24347099 ~ 24347419 (-) True G25175
TU31821 lncRNA upstream 179556 24981934 ~ 24982139 (-) True G25375
TU31834 lncRNA upstream 186467 24988845 ~ 24989054 (-) True G25387
TU31874 lncRNA upstream 405396 25207774 ~ 25245930 (-) False G25415
TU31876 lncRNA upstream 405396 25207774 ~ 25247379 (-) True G25415
TU31882 lncRNA upstream 450338 25252716 ~ 25256361 (-) True G25421
AMCG00007656 mRNA downstream 20223 24761918 ~ 24779617 (-) True AMCG00007656
AMCG00007651 mRNA downstream 154476 24629506 ~ 24645364 (-) True AMCG00007651
AMCG00007652 mRNA downstream 175367 24614500 ~ 24624473 (-) True AMCG00007652
AMCG00007646 mRNA downstream 229543 24563795 ~ 24570297 (-) True AMCG00007646
AMCG00007642 mRNA downstream 237384 24559055 ~ 24562456 (-) True AMCG00007642
AMCG00007661 mRNA upstream 3413 24805791 ~ 24810467 (-) True AMCG00007661
AMCG00007666 mRNA upstream 131930 24934308 ~ 24945796 (-) True AMCG00007666
AMCG00007668 mRNA upstream 164494 24966872 ~ 24979337 (-) True AMCG00007668
AMCG00007667 mRNA upstream 187134 24989512 ~ 25006830 (-) True AMCG00007667
AMCG00007677 mRNA upstream 520710 25323088 ~ 25334806 (-) True AMCG00007677
TU31562 other downstream 531919 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 827175 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4327136 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 4468029 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 4876687 19915146 ~ 19923153 (-) True AMCG00007487
TU31883 other upstream 461954 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 828417 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 10067057 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 12437711 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12692533 37494911 ~ 37499392 (-) True G27416

Expression Profile