RNA id: AMCG00007666


Basic Information

Item Value
RNA id AMCG00007666
length 3376
RNA type mRNA
GC content 0.42
exon number 11
gene id AMCG00007666
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24934308 ~ 24945796 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGAACATCGGCTGGTTAACAAGCTCTGCGATAGCGATCCCACCACACCAGAGCCTAAAATGGGAGCTTGTATGGAGGCCATGTCCGGCTTCTTTAACCGACCCAAGAACACCAATGTAAGGATTAGCCTGCCGGCGGTGTGTTTCGTCTGGCAGATCGTTATGATCATCCTCTTCGGTGTGTTCATGCGTTATGACAAGGAGTCCGATGCCCACTGGTTGGTAACCAAGAAAGAGGAGAATATCACCAGTGACATAGAAAACGACTTTTACTACAGATACCCAAGTTTCCAGGATGTCCACGTGATGATATTCGTGGGCTTTGGTTTCCTCATGACTTTTCTGAGGAAGTACAGCTTCAGTGCAGTCGGCTTCAACTTCCTGATTGCTGCCTTTGGTATCCAGTGGGCCCTTCTGATGCAAGGCTGGTTCCAGTCTCTCGACTACACGGATGGAAAGATCAAGATTGGAGTAGAGAACATGATCAATGCGGATTTCTGTGTGGCTTCCTGTCTGATTGCCTATGGAGCTGTGCTGGGGAAAGTCAGTCCTGTCCAGCTGATGGTGATGACACTGTTTGGAGTAACTCTGTATGCTGTGGAGGAGTACATCATCTCAAATCTCCTTCATGCTCGGGATGCGGGAGGCTCCATGATTATCCACACATTCGGTGCTTATTATGGTCTGACCATCTCCCGAATTCTCTATCGACCGAATctaaatcaaagtaaacaccTGCAAGGCTCTGTCTATCACTCGGATGTTTTTGCCATGGTTGGAACACTTTTCCTTTGGATGTTCTGGCCCAGTTTCAACTCTGCCACCTCAGCCCATGGTGATGGGCAGCACAGGGCCGCCCTCAACACTTACTTGACACTGACAGCAAGCGTCCTCACCACAGTGGCCATCTCCAGTCTGACACAAAAGAAGGGCAAATTGGACATGGTGCACATCCAGAATTCCACACTGGCCGGGGGTGTTGCCGTGGGAACTGCAGCTGAGTTCATGCTGATGCCCTATGGCTGCCTGATCGTGGGTTTCTTCTGTGGTATCATCTCCACGCTGGGCTACATCTATATAACACCTTTCCTGGAGTCTAAGCTCCATATTCAGGACACCTGTGGCATACACAACTTGCATGCCATGCCAGGCTTTATAGGAGGAGTTGTGGGTgctattactgctgctgctgccactgaGTCTGTCTACAGCGCGGAAGGGCTGGCAAACACTTTCAACTTTAACGGGGCCTTTGCGAACCGGCCTCCTACCATACAGGGTGGATACCAGGCAGCTGGGCTGGCTGTGGCACTCGCCTTCGGGTTAGTTGGAGGAACTGTGTTGCCAATCTGGGGTGATCCTGCAGACGAGAACTGCTTTGATGATGAGGTTTACTGGGAGGTGCCCGAAGACGAGGAGAGCATTCCGCCCGTTATGGGATACAACCACCACATGGCCAACAAATACACTGAACAGTCTGATTCGAACTTCACAGTGGAACAGAGCAGCAACTGAGTAGCCCACAGCCACTGTCCCGTCACCTGGCTCATCGCTGGACAGCCATCACCACATCCTCCTCTCCCCACGGCTACTCAGTGCTATGAGTAAGAACCTATAAAACAGGACTCTGTTAAAAACTGTCCTGGGACCAGAGCCAGTATTGTCTACTCCACATCCTCTTTTCAAATCATAAACCTAACCGAAGCCCCTTTTTGCTGACATCAAGCGTCCTGTGCAGATCGTTTGCAAAGCCTTGCAGAACAGGTGCAGTTGGAAGAAGCCCCGGTGTGTGAACTCCTGTGTACAGACAATCTTTATGTGACAGTTTTAATTGGTGTATAAATTTGATGGTCACCTCTGGGATCTGCAGCAACATCAGGTGCAACTTAAGGTGCATCTCCAGTCCCGGAACAAGATGCACCGCAGCATAACTGTGAAAGAGCACTttattgaagattttttttaagcttttgcTAACTAGTGTTAACATGAAGGATTGAAGTTGAAATTGTGCACTGCAATTAACATAGGAATGGAATATAATAagattgtttttgaaatttaacGTATGCTTTCAAAcaaaactttgcttttatttaatcgaggggggggaataaatagaaaaaatacaaatgcactcaatgaaaaagctttgaaatgccTTCTGTTCTTTGCTTTATAATCACCATGCATGTCTAgttaaagaataataaactaTGTTCAGTTTGTCTCTACGTGAACTCTTTCAACACTTCTATTTTCTTGATTGTTAAGCCTTTGTAGATTCCCTcttctacaaaataaaacaaatcctctttgtgttatttttcctGCACCCAACATGGAAGTGAGTACAGGAATGTGTACATCTTATAAGgtaattgattttgttattcagatttcagtaattgtttttatttttatatatatattgtaaataatttggttggtgttggaaaaaaatatgaagtgaTTGCTTTCACATTAGTGTGATGAAATTGTACTCCCTCCCCCGTTTAAAGAAACACTACATTGATGGATAATTAACTGCTTGCATAATGACCTCCGTCCATTTACAGCGTGGTGCATTATGGTACAAAGCAGGGAGACATTGTATTTATGCTGCAAATGCATCACAAAAGAGATCTTTGCACTTCTGGACTAAACTACAGAGCAGAGATGAAAGTATATACTACAAACAtaatttttctaaaatattagAAATCGTTAACACTGTGTTAAAGCTTAGCCGATTGTGAAAGCTGTGTGAAtctctgtttaatatttttctatgaTAATGAATGCACCGGTCATAAACCCTTTTGCTCTTTATGATAAAATGTTGATGTTCAATAATGATTTTTTCTCCTGAGAATACATTTAGGCCTGTATCAGTAATGGTTTGCAACACTTTAGATTGGAAGTTGAATTGTACATTCATAAATTCATTGCGGTCTGAACTATATGAATTGAATTTCATTAACTTGGTTGTAACTGATCTCTACTGCTGATcagttatgtattattattttttggcaatttgttcaatatattaacactttattttatcataCAATGTAAATACTTAGCTTACAgtctgtttaataaataaagtaatgccACAATAACATAAATTGTGTCCTTTTCTTCTCTTATCCATGACATGTAATTTCAGACCTgcatctgtttgtttgcttacaTTCCCTCCAAGGGTATAGATGTGTTCCTCCTGGAGATTAGAACTGCTTCTTTGGATTTATcaaattgtgtgtatatatatatatatatatatagtatttagtattaaatcttacatttgaatgtaaaacCTGTCTCTCCTTGTAAACATcaggtatatttaaaaaaaataaaagac

Function

GO:

id name namespace
GO:0072488 ammonium transmembrane transport biological_process
GO:0015695 organic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG:

id description
K06580 SLC42A, RHAG, RHBG, RHCG, CD241; ammonium transporter Rh

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31671 lncRNA downstream 392150 24498365 ~ 24542158 (-) True G25248
TU31655 lncRNA downstream 426489 24433080 ~ 24507819 (-) True G25239
TU31571 lncRNA downstream 565935 24368169 ~ 24368373 (-) True G25177
TU31570 lncRNA downstream 579998 24350030 ~ 24354310 (-) True G25176
TU31569 lncRNA downstream 586889 24347099 ~ 24347419 (-) True G25175
TU31821 lncRNA upstream 36138 24981934 ~ 24982139 (-) True G25375
TU31834 lncRNA upstream 43049 24988845 ~ 24989054 (-) True G25387
TU31874 lncRNA upstream 261978 25207774 ~ 25245930 (-) False G25415
TU31876 lncRNA upstream 261978 25207774 ~ 25247379 (-) True G25415
TU31882 lncRNA upstream 306920 25252716 ~ 25256361 (-) True G25421
AMCG00007661 mRNA downstream 123841 24805791 ~ 24810467 (-) True AMCG00007661
AMCG00007662 mRNA downstream 131930 24799840 ~ 24802378 (-) True AMCG00007662
AMCG00007656 mRNA downstream 154691 24761918 ~ 24779617 (-) True AMCG00007656
AMCG00007651 mRNA downstream 288944 24629506 ~ 24645364 (-) True AMCG00007651
AMCG00007652 mRNA downstream 309835 24614500 ~ 24624473 (-) True AMCG00007652
AMCG00007668 mRNA upstream 21076 24966872 ~ 24979337 (-) True AMCG00007668
AMCG00007667 mRNA upstream 43716 24989512 ~ 25006830 (-) True AMCG00007667
AMCG00007677 mRNA upstream 377292 25323088 ~ 25334806 (-) True AMCG00007677
AMCG00007678 mRNA upstream 393566 25339362 ~ 25355884 (-) True AMCG00007678
AMCG00007679 mRNA upstream 413983 25359779 ~ 25362397 (-) True AMCG00007679
TU31562 other downstream 666387 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 961643 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4461604 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 4602497 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 5011155 19915146 ~ 19923153 (-) True AMCG00007487
TU31883 other upstream 318536 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 684999 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 9923639 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 12294293 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12549115 37494911 ~ 37499392 (-) True G27416

Expression Profile