RNA id: AMCG00007667


Basic Information

Item Value
RNA id AMCG00007667
length 3508
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00007667
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24989512 ~ 25006830 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCAAGCTAGGGTCAAATAAACCTTCTCTGTTGAAATTGGATGCAAGGACAATTCCAGCAGTGACCACCAACATGCCGACTTCAAAGACCCAGGCCCATGACATGGGCACTGCATTCATCCAAACGCAGCAGCTCAACGCGGCCATGGCTGACACGTTCTTGGAACATCTGTGTCTGCTGGACATCGACTCCGAGCCCACCACTGCCCGCAACACTGGCATCATCTGCACCATTGGCCCTGTCTCTCGGTCTGTTGAGACTCTGAAGGAAATGATCAAGTCGGGAATGAACGTGGCACGGATGAACTTCTCTCATGGCACTCATGAGTACCATGCAGACACCATCAAGAATGTGCGAGAAGCCACGGAGAGCTTTGCTGCTAATCCCATCCTCTACAGACCAGTTGCTGTGGCTCTGGACACTAAGGGACCTGAGATCAGAACTGGCCTCATCAAGGGAAGTGGAACTGCTGAGGTCGAGCTGAAGAAAGGAGAGATGCTGAAGGTGACCCTTGATGATGCCTTCAAGGAGAAGTGTGATGAGACCATTATGTGGCTCGACTACAAGAACCTGCCCAAGGTGGTTGAGGTGGGCAGCAAGATCTATGTGGATGATGGGCTCATCTCCCTGTTGGTCAAAGAGATTGGATCTAACTACTGCATGTGTGAGGTGGAGAATGGTGGCTCTCTGGGCAGCAAGAAGGGAGTGAACCTGCCCGGGGCTGCAGTGGACCTGCCGGCCGTCTCGGAGAAGGACGTCCAAGATCTGGAGTTTGGTGTGGAGCAGAATGTAGACATTGTGTTTGCATCCTTCATCCGTAAGGCTGCTGATGTTCATGCTGTGAGGAAAGTGCTGGGAGAGAAGGGCAAGAATATCAAGATCATCAGCAAGATTGAGAACCACGAGGGCGTGCGCAGGTTTGATGAAATCCTGGAAGCCAGTGATGGAATCATGGTTGCCCGTGGAGATCTGGGCATTGAGATTCCTGCCGAAAAAGTCTTCCTTGCACAGAAGATGATGATTGGCCGCTGCAACCGAGCTGGGAAACCAGTCATCTGTGCCACTCAGATGCTGGAGAGCATGATTAAGAAGCCCCGCCCCACCCGTGCGGAGGGCAGTGATGTGGCCAATGCAGTGCTGGATGGAGCAGACTGCATCATGCTAAGTGGAGAGACCGCCAAGGGAGACTACCCCCTCGAGGCTGTGCGCATGCAGCACATGATTGCTCGAGAGGCCGAAGCAGCTATATTCCACCATCAGGTGTTTGCTGATCTTCGCCGCATAACGCCGCACTCCAATGACCCCACCGAGGCTATTGCCATCGGCGCTGTTGAGGCTTCCTTTAAGATCTTAGCTTCAGCTTTCTTAGTTCTGACCGGGTCTGGCAGgcagCCTGCCTTGAACTGCTTTGCCATTTTCAACCTCTGTCCATGTCGCAATGTATGCAATGCTGTGGGAGAGCCCAGGAGAGTTCTAACTAACCCCCTCACCTGCGGGCACTGGTGGCTGCAGATTGCTCGGGAAGCGGAGGCAGCCGTGTTCCACCGGCAGCTGTTCGAGGAGCTGCGCCGCCTTTCCCCCCTGACTCGTGATCCCACTGAAGCCGCTGCCATTGGCGCTGTAGAGTCTGCCTTCAAGTGCTGTGCCAGTGCCCTCATTGTGCTCACCAAGTCTGGCAGGTCCGCCCACCTGATCTCCAAGTACCGCCCCCGCGCCCCAATAATCGCTGTGACCCGTAACGGGCAGACGGCCCGCCAGGCTCACCTGTACCGCGGCGTGTTCCCCGTGCTCTTCACTCAACCTGCCCATGAAGTGTGGGCTGAGGATGTTGACCTGCGTGTCAACTTTGCTATGGAGATTGGCAAGACTCGAGGGTTCTTCAAGAGTGGCGATATGGTCATTGTGCTGACTGGGTGGCGCCCAGGTTCTGGTTACACCAACACCATGCGTGTTGTCCCTGTAGCCTAAACTGAGGGACTGCACTGCTCCCTTCTCTTGCAGCAGCTTGTGAGGCCCCAGTCCTTTCATTTCCTACTGTTCTGTCATGTCATGCTCACCCACTCCTTACAGTTAAGTTCTTTTGATCTAGATAAAAACACCACCAGGCCTTTTGAGGCTTGTGCATTTAAACTGTTTCTGGCCAAAACCCCtccaccattttgtttttctcatctaTGCTAGTCAACCAGGGCACTTGTACTTGTTGCCAGAAcctataatatttattaaaataaactttatctagaacacaaatgcaatttGCTGGGCTTCTGTTTTGGAAAGCAGTTAGGCTGCTGAGGAACAAGGCTCAGGCACCTGGttagaccaaaaaaaaatagtataaaTTTCTCATGATTTCACTGACTGGTGTAACTGTCATATAGAGTTTAACAACCGGTTTACCAATGAACAAATGATGGCTCTTGGAATAAGGGATATGATCAGTGTTGGACAGACCACTAAATAAAACTCCTTTCTCATTAGAGGATTACTACTTTGATTTTTAAAGGATTTGTGACCTATATGAATGTTCCTTGTTTCCAGCTGGGTCTCTCTGTCTAGTCTTGCATTAAAACAGTTGCCTGGGCCTCCTTGCTTACAGTAGTGTTACTCCGTGTCTTGTGTATCTGGCGTcttctgtactgtatttaaatgctgCACTCCACTTACTGTAATCttgcattgttttacattgtggCAATTAAGACAGTGGGCTAccaataactatatatttttaagataaatatttaatcttggACGGCTGAATTGCAGTGGTTTGACTGAAATATTTGAGAAGGGGAAGTAGGAGCCCTGTAAATTCTGTAAAtagccattttgttttcccaaaggATACTTCTCTGTTTTGAAAGCTTCAGTTGTGGGTTTATTCCACAGGGGGGCAGCAGTGACCAGCTTCACAGTTGAGCTGGTGTGGTGTGTGCAATTTTCTCCGTAAGCTTGCTGTAAACCATGGGCTCTTGTGGGGGTCTCGAGTCAACTGAACTTGGTTTCACTTAATGATCCTTTATAAATCTGATCTGGTTAAAGCCAAGAGCCATGAAAAACTAAGCTTATGGTTTGTGATTTTGCTTAACCCTGGAAAAAGGTTTTCAGCCTGTTCTGAGAACCACTTTAAAGTCGCAAAATAGTTAATATGAATGTTAGTCTGCCCTTTGTTGGAGTGCCTGTGGCCTTGGGTACTAAACTTGGGTCAGCACTTTAAGGGTTTCTATAAGGGGATGGTCTTTGCCTTCCCTCTCACCATCCTCTCCCCTGTCAGCTATTTTCAGGTGGAGCACTTGCAATTCTTCCTGTGCTAGAGCCTACACTGGTGTCCTGTCTCGGAGTGATTTagatctgtttttgtgtgttctgCTGTTCTCTGCTAGCTTTCTGATTTGTGGTAACGGTTAAAAATCAATATGGGGAAAAATGTAGAAACCTCTGGTGTATTGAGTTGTCCTGCTTGACTGTGGATTTTCCACCAATAAAGATGAGCACCTGA

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0016310 phosphorylation biological_process
GO:0030955 potassium ion binding molecular_function
GO:0000287 magnesium ion binding molecular_function
GO:0004743 pyruvate kinase activity molecular_function

KEGG:

id description
K00873 PK, pyk; pyruvate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31834 lncRNA downstream 458 24988845 ~ 24989054 (-) True G25387
TU31821 lncRNA downstream 7373 24981934 ~ 24982139 (-) True G25375
TU31671 lncRNA downstream 447354 24498365 ~ 24542158 (-) True G25248
TU31655 lncRNA downstream 481693 24433080 ~ 24507819 (-) True G25239
TU31571 lncRNA downstream 621139 24368169 ~ 24368373 (-) True G25177
TU31874 lncRNA upstream 200944 25207774 ~ 25245930 (-) False G25415
TU31876 lncRNA upstream 200944 25207774 ~ 25247379 (-) True G25415
TU31882 lncRNA upstream 245886 25252716 ~ 25256361 (-) True G25421
TU31916 lncRNA upstream 444933 25451763 ~ 25452022 (-) True G25446
TU32026 lncRNA upstream 1046934 26053764 ~ 26069317 (-) True AMCG00007687
AMCG00007668 mRNA downstream 10175 24966872 ~ 24979337 (-) True AMCG00007668
AMCG00007666 mRNA downstream 43716 24934308 ~ 24945796 (-) True AMCG00007666
AMCG00007661 mRNA downstream 179045 24805791 ~ 24810467 (-) True AMCG00007661
AMCG00007662 mRNA downstream 187134 24799840 ~ 24802378 (-) True AMCG00007662
AMCG00007656 mRNA downstream 209895 24761918 ~ 24779617 (-) True AMCG00007656
AMCG00007677 mRNA upstream 316258 25323088 ~ 25334806 (-) True AMCG00007677
AMCG00007678 mRNA upstream 332532 25339362 ~ 25355884 (-) True AMCG00007678
AMCG00007679 mRNA upstream 352949 25359779 ~ 25362397 (-) True AMCG00007679
AMCG00007675 mRNA upstream 358207 25365037 ~ 25380395 (-) True AMCG00007675
AMCG00007676 mRNA upstream 383359 25390189 ~ 25454403 (-) True AMCG00007676
TU31562 other downstream 721591 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 1016847 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4516808 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 4657701 20331513 ~ 20331811 (-) True G24217
TU30203 other downstream 5066359 19915146 ~ 19923153 (-) True AMCG00007487
TU31883 other upstream 257502 25264332 ~ 25264951 (-) True G25422
TU31949 other upstream 623965 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 9862605 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 12233259 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12488081 37494911 ~ 37499392 (-) True G27416

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025067 False 2358 mRNA 0.51 10 NC_007129.7 924949 ~ 951570 (+)