RNA id: AMCG00007671


Basic Information

Item Value
RNA id AMCG00007671
length 4224
RNA type mRNA
GC content 0.36
exon number 6
gene id AMCG00007671
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25247801 ~ 25256361 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCGCAGGTCAAACCAAAAGCGAGTTAGGAAATTGTTCGCCAGTCTGAAGGGTGTAATCCAGTGATCACTAAATATTTAACGTGTTTACGCGCCATGACGATAAAGAAGAAGCAATGAGAATAGAGAACATTTAAAGCGAAAAACTAAGTGAGACGGGAAAATGGAGGAACAGGAGAAAAACTCGCTGATTACAATACCCGAGTCACAAACACCGGGTCCCAGTACCAGACCAAAGCGGGCTGAGAGTGGGCTGAGGCCAGTGGAAAAGAGAGGCCCTTACATCATGTCCAGAGTTCCTGCCATTCACCTCAAACTGCAAAAGCACAGAGATATGGCACGCAAGGCCCTGAAGAAGAAAGGAATGATGGGTGGAGTCGTGGCACAGCAACCCAAACAGGGAGCTAAGAGGAGTGTGAAGTTTAATAAGGGCTATGCTGCTTTGAGTCAGAGTTCTGAAGACACTCTTGTATCACTGGATTCAGATAGTGATGCTGAGCTGGAATCCCAGTATTCCTCAGGATACTCCTCAGCAGAGGTTAACCAGGATCTGAACAGGCAGCTGCTGCAGGATGGCTACCGACTGGATGAGATCCCTGATGATGAGGACCTGGATCTCATCCCTCCTAAAGCCATGGGTTCCTCTTCCTTTGCCTGCTGCTGTGCAGAGATCCCTTCCTGCTGCGTCCAGTAACACAGGGCACACAGTGTGGCCCGAGCAGGGGGTGCTTCAGTCTTGAGAATGGGTGGTAAGGTCAGTGTAGGCGGAGAGGTCTCTCGTGGGTCACTGCTCTGCCTCTTGACACCTTCACTGTACGTAGATGTGGTGGCACTCTGTGGTCTGGTATTGTAACTGATCCTCGTCTTGCTTGATTTCTGCCCATAACTGGAAGCTTCTACTAAACGTCTCTCCAGCTTTTGAACTTTGAACAGTTACTGAAGGGTGAACTAGAAATTGTCAGAAATGTTCACAGCGTAATCTAAAAGTAAGTCAATTTGCTATTTAAATTACCATCATCACTTATGTTACTGAATTTATAAGGTATCAGAAAGTTGCTATTTTGACTCCCAAATTTACATGGGACTCATAGTTAAATATAGATGCcttgtggaggaaaaaaatatatatgagatTTAATCTTTATAgtaaagttttatttaaacaggtcACACCTCTATAGCATTTTATGTGGTTATTATTTCAGGCAATATTGCCTTTATAAGACTTTTAATTAATCCCACAGTGACGCTGGGATTATAGGATCTAGAAAATTGATGCACAGTTGATGCTGAAGGTGTTTGAGAACAATTGTTGCAAAATCTGAATTTTGCTAAACTGCACTGAATTTTTTCTCTAGGGGATAGATATTCAGCTCCAtacattatattgcatttgGAGAATGCAACCCATCAGTTAATATCCCACTTTTGTCAATCTTTATGGAATtagttacatttataaaaagaacaaactaTCAGAAATTAATCTTATGAGTACCAGTTTACGAACATAAATATAGTTCCTTTGGAATTACCATCTTATTCACTTGCAAAATTGCATGACACCTTTACTGCAagtatctgtttaaaaaaaatgaaagaaaccaACACTAATGTATGAATACAAGTACTAATTTGCATAAAACTGATTTACAGAAAAGATGGGAGGACCTCTAAGCAAGTCCCTCAGGTTCTTTGTTATTCTTTGTATGAAAACCAAAGAGCGGTGTGTTACTTTACTTCATGACAAATGGTATTTCCCTTGAAAtagtagtatttgttttatcctGCACTTGTAATCATTCTTTATATTCAGGCTCAAACTAGTTCTCTATAGTGATGTGCATTTTGTTGTAAGAAACCAAATGTACATTATGTGGGCATATccccacaaaaaacaaatgagtctgaaacatttaattttggtaAAGTATTTTTAGTACTGAGAAACCTTATGgaaatatttataagaaaagtCAAGAGAGATTGGTTATTCAGTATTGTCCACAGAAGCACTActaagtatataatatatctaAAGTGAATTATCACCaaactttaattttcttttagtattaagtgaatttatttatctataaaaagcaaataatgaTATGTTCCTGGAAGCAAACgctgtaactttttttttttatgaaggcactcaaaaaactaattttcttatgcttaaaaCTTCAGgaactaatatttttttaataatttgataaatatCCATAAAGTTTGTAGCTCaaaattttttaaaaaaaatcctgtttttaAAGGTGACCCTAAAGATACAAGTCTGCACTATGAAATCTAATAAGAAAAAGAATGCTGGCAAAATAAAtcgattttaaaattaatagtaTTTCTTCCTAGAAATGACTGGTATCTTTTGTGCACATAGTTAAAACATTTGCCTGCTGTCCTGTATAGCACAACACGTATAATGcagcacacagtcacacaatgCAGTTACAGGCACTATGTCTTTCTCAATTGCATATCAGTGATGGTTGGCACCAGCAACAAGGAATACTACAACTTTAGAGTGCCTTTTACAAATACTACAAATTTCCCATTCCTAGCAAATTGCtctttttattaaactgaaactGCTCATCAGaagtaaatgtatgtttttacacAAAGGTTAATCTGTTAAACAtgaattttacatttctctctAGTTCAGTGATTGcgttgtattttttatttgttcgtTGCAGATTCTCCCCCCGtgtccattcatattttttgatGTTTATACTTAAGTATAAAGCTTATTTTCAGTTTAGTCTAAACTCTATTTTCATTCTCGGCATGCATGTCCCTAATGAGCGCAATTGGAACATTGAGTCTATCACAGATGTTGGACGTTTCATTTTTACAACCGTTATAGATAACCTATGAAGCTGCTAATAAAGCATAGAGGTGTGATAATCCAAGTGACAACACTGGGATACTCTGTGTTTACGTGGGTTACTacagaaataaagtaatttagTAAAAAGTCTGTTTTGACGCATGTATGAAGTTTGAAAAGgtcatgttttcaaaatggcTACAGTAGAAGGCCCCGCCCGGGTTCGTTATTCTAACAATATTATGTATACACAATGcaccattttgaaatattaaagttAAAGCACTTTTCAATGTTGGGAGTTCTGTTACTCTTTCCATGTGAAAAGCACAGGGAACACACAGTGACTCTGTTGTCCAAGCTGTTGTAATCAGCAAATGCATGAAAGTTATTGCGCTTGGGATTGTCTTCAGAAATCGGTTGATCTTctcttttcaaaagaaaatctgtaattaaattattttgaagagGAACCAAACTCTTTTACATGTTGTTTGTGGTTCTGACCCTCTGCAGCTCTGAGAGTGGCCTGTAGAGGGACCCAGATTGTaagtttttcatttacaatgaGAGTACACAGACAATGTTGAGTACTCTGAATTTGGAGACACCAGTAGAATGAACCAGATGTATTGGAGATGTAGGCATTTCTGTTGTAAAGATGTAATTTCTCACAtgcttttattatataataggacagtctttttttttttttttttcgctcaATGTCTGGAAAGTGACAGGTGTACATAGGAGTGTGCCTTTTTATATAACGGCTAGATTTAATATTCAATAACTGAAATGTGCTTCCTCTAAGGCATCCCACTGATAAACATCTCATTCACAGATGTCTAATATGGTTACACTGGTAGTATTGAATATCTGATGACATCTTATAAAACAAATTCGATTGCCATGGAACTTCattgtatttcttctgtttgttttgttattattctttcttttccatgGCGACTGTGTTTCCTTCTGTGACTGAAGAATGTTTTGGGTGCTTTGTGCCGCATCTTGAATGCAAGCTTTGTGTccgtttagatttttttatgtgcacatttgtgttttgaactACAAACacgtgtctgtgtatgtattctatatgtgtgagtgtgttctaTATAGATAGTGTTTATCCcacagtgcagtgtgcagtTGCTGTCACTGCACATATCTGTACTATGCAACTGACCTGACAATCCTTTCTTTAAACACTTTGCTAATTAATGCTCTTACAAGTAAATGAGTGCTGAATGCAATAATGTCATATACTTTATAGTTCTATTAATGAAAgctaatatttgtatttaattgatgtgttgctgtttataaataaatacatttaacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31813 lncRNA upstream 294473 24953125 ~ 24953328 (+) True G25367
TU31742 lncRNA upstream 306221 24934479 ~ 24941580 (+) True G25302
TU31744 lncRNA upstream 336430 24879365 ~ 24911371 (+) True G25303
TU31739 lncRNA upstream 385933 24817342 ~ 24861868 (+) False G25300
TU31861 lncRNA downstream 59426 25315787 ~ 25321025 (+) True G25405
TU31915 lncRNA downstream 195172 25451533 ~ 25451793 (+) True G25445
TU32014 lncRNA downstream 797340 26053701 ~ 26061246 (+) True G25531
TU32051 lncRNA downstream 878000 26134361 ~ 26134577 (+) True G25561
TU32052 lncRNA downstream 880406 26136767 ~ 26142288 (+) True G25562
AMCG00007672 mRNA upstream 452 25241954 ~ 25247349 (+) True AMCG00007672
AMCG00007673 mRNA upstream 14306 25232890 ~ 25233495 (+) True AMCG00007673
AMCG00007669 mRNA upstream 77426 25140930 ~ 25170375 (+) True AMCG00007669
AMCG00007670 mRNA upstream 171103 25068061 ~ 25076698 (+) True AMCG00007670
AMCG00007663 mRNA upstream 212113 25015676 ~ 25035688 (+) True AMCG00007663
AMCG00007674 mRNA downstream 47918 25304279 ~ 25314909 (+) True AMCG00007674
AMCG00007680 mRNA downstream 198319 25454680 ~ 25467236 (+) True AMCG00007680
AMCG00007681 mRNA downstream 278148 25534509 ~ 25534985 (+) True AMCG00007681
AMCG00007682 mRNA downstream 279193 25535554 ~ 25673151 (+) True AMCG00007682
AMCG00007685 mRNA downstream 441862 25698223 ~ 25708138 (+) True AMCG00007685
TU31514 other upstream 1053320 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 2054280 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 2964843 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 4181018 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 6191668 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 2827461 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 3196648 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 3746734 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 4509467 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 10354755 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile