RNA id: AMCG00007675


Basic Information

Item Value
RNA id AMCG00007675
length 1383
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00007675
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25365037 ~ 25380395 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGACAGGAAAGAGGAGGATCGGAGGGAAGGGGGGAGCTgctggaggtggtggtggtggtggtggtggtggtggaggGATTATCCAACCTCTCTTCCTATGCAAAGACTGAAGACAAACTTTTCAAGCATCTCTTCAGCAGCTATCAGAAGTGGGTGAGACCAGTGGAACACCTGAATGGCACTGTGAGGGTGAAGTTTGGACTAGCAATCTCCCAACTGGTAGATGTGGATGAGAAAAACCAACTGATGACAACCAACGTGTGGCTGAAACAGGAATGGGTCGATGTAAAGCTGCGATGGGACCCTGCAGACTACCTAGGAATAACGTCAATCCGAGTTCCTTCTGACTCCATCTGGATCCCTGACATAGTTCTCTATGACAACGCTGATGGGCGATTCGAGGGCTCTGTCACTAAGACAGTGGTTAAGTATGATGGCACCATCTGCTGGACACCACCAGCCAACTACAAGTCCTCATGTACCATCGAtgtcacttttttccccttcgaCCTGCAGAACTGCTCAATGAAGTTTGGTTCCTGGACCTATGACGGCACCCAGGTGGACATCATCCTGGAGGATTTCCACGTAGACAAGCGTGATTACTTCGATAATGGCGAGTGGGAGATTGTTACAGCCACGGGCAGCCGGGGAGTGCGGACAGACGGCTCCTGCTTCTACCCCTTTATTACCTACTCCTTCATCATCCGCCGGCTGCCTCTCTTCTACACCCTGTTCCTCATTATTCCCTGCATTGGGCTGTCTTTCCTGACCATCCTGGTGTTTTACCTGCCATCCAACGGTGGGGAAAAAATCTCCCTGTGCACATCAGTGCTGGTGTCCCTCACCGTCTTTCTCCTCGTGATAGAAGAGATCATTCCCTCCTCTTCCAAGGTGATCCCTCTGATTGGAGAGTACCTGGTCTTCACAATGATTTTCGTCACCCTCTCCATCGTCATCACCGTCTTTGCCATCAACATCCACCACCGCTCCTCGTCCACTCACCATGACATGGCCCCGTGGGTCCGCCGGATCTTCCTGCACCGGCTGCCAAAGCTGCTGTGCATGCGCAGTCACGTGGACCGCTACGCCACCCCAGGGAGAGGAGGTATCACAGGCCCCGGGTTTGAACCACCTTCTTCCAGAAACAACCTGCAGGCGGCGCTGGACTCCATTCGCTACATCACCCTCCATGTGGTGAAGGAGAATGAAGTCCGTGAGGTTGTGGAAGATTGGAAGTTTGTGGCACAGGTACTGGATCGAGTGTTCCTTTGGACGTTCCTTCTTGTCTCCGTTTTGGGATCTCTTCTTCTCTTCATACCAGTAATTTACAAGTGGGCCAACATCATCGTCCCCAATTATGTAGGGAGCCACAGCTAA

Function

GO: NA

KEGG:

id description
K04807 CHRNA5; nicotinic acetylcholine receptor alpha-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31882 lncRNA downstream 108676 25252716 ~ 25256361 (-) True G25421
TU31876 lncRNA downstream 117658 25207774 ~ 25247379 (-) True G25415
TU31874 lncRNA downstream 119107 25207774 ~ 25245930 (-) False G25415
TU31834 lncRNA downstream 375983 24988845 ~ 24989054 (-) True G25387
TU31821 lncRNA downstream 382898 24981934 ~ 24982139 (-) True G25375
TU31916 lncRNA upstream 71368 25451763 ~ 25452022 (-) True G25446
TU32026 lncRNA upstream 673369 26053764 ~ 26069317 (-) True AMCG00007687
TU32027 lncRNA upstream 673369 26053764 ~ 26070848 (-) False AMCG00007687
TU32121 lncRNA upstream 1618911 26999306 ~ 26999546 (-) True G25615
TU32123 lncRNA upstream 1648576 27028971 ~ 27029294 (-) True G25617
AMCG00007679 mRNA downstream 2640 25359779 ~ 25362397 (-) True AMCG00007679
AMCG00007678 mRNA downstream 9153 25339362 ~ 25355884 (-) True AMCG00007678
AMCG00007677 mRNA downstream 30231 25323088 ~ 25334806 (-) True AMCG00007677
AMCG00007667 mRNA downstream 358207 24989512 ~ 25006830 (-) True AMCG00007667
AMCG00007668 mRNA downstream 385700 24966872 ~ 24979337 (-) True AMCG00007668
AMCG00007676 mRNA upstream 9794 25390189 ~ 25454403 (-) True AMCG00007676
AMCG00007684 mRNA upstream 250397 25630792 ~ 25631490 (-) False AMCG00007684
AMCG00007683 mRNA upstream 273325 25653720 ~ 25658719 (-) True AMCG00007683
AMCG00007689 mRNA upstream 292210 25672605 ~ 25681857 (-) True AMCG00007689
AMCG00007688 mRNA upstream 482627 25863022 ~ 25895601 (-) True AMCG00007688
TU31883 other downstream 100086 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 1097116 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 1392372 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4892333 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 5033226 20331513 ~ 20331811 (-) True G24217
TU31949 other upstream 250400 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 9489040 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 11859694 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12114516 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 12187222 37567617 ~ 37569284 (-) True G27437

Expression Profile