RNA id: AMCG00007676


Basic Information

Item Value
RNA id AMCG00007676
length 3090
RNA type mRNA
GC content 0.51
exon number 11
gene id AMCG00007676
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25390189 ~ 25454403 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTTGAGACACAGTTCTACAAGCCCGCAGAAATTCAACCCAACGCGGGGGCGCAGCGACTCGCAGAACCCGGCGCTCAACGGTGGCTCCTTCTGGGGTTTAAAGATGGCGTCACAGTCTGAGCCCGCAGAGTCCCAGCAGCCCCTGCGCGGCCAGGGGAAGAGGGGCGGAGaCCTAATCCTCACCATCACCAGGGCATTACATTTCCTGGAGAGTCCAGTGATAGCTAGTGGCTATAAAGGCGATGAATATGAGGTAATCAATAGCTTGGCACGGCCCAAGATGCACAAGTGTTGGAGCCAAGCACTCCAGGACTGGTTTTGCTGTCTGTTCATGATCAAGGTTTGTTTTACAGGAGGAAGTTCAGCGGATGCCGAGGAAAGGCTTATGAACTGCCTGTTGGCCAAGGATCGCTACAACAAAATGATACGCCCAGCCACCAACATCACAGAGCGAGTGACTATCAAGCTGCAGGTCTCCTTGGCTCAACTTATCAGCGTGAACGAGAGAGAGCAAATCATGACAACAAATGTCTGGCTAACCCAGAACTGGATCGATTACAGACTGTCCTGGGATCCCTCGGAATATGATGGGATTGACAAACTGCGGCTACCTCCCCGACATATATGGCTGCCAGATATTGTATTATACAACAATGCTGACGGCACATATGAAGTTACCCTCTTTACCAATGCAATAGTGCAATTCAATGGCAGCGTCTCTTGGCTGCCACCAGCCATCTATAAGAGCGCCTGTAAGATCGAGGTCAAGCACTTTCCCTTTGACCAACAGAACTGCACTCTCAAGTTCCGCTCATGGACATACGACCACACTGAAATTGACCTGGTGCTGAAAACTGGAGTGGCCAGCATGGATGATTTTACCCCCAGTGGAGAATGGGACATTGTGGCTCTGCCTGGCCGGAGGATCGTCAACCCACTGGACCCAACTTATGTAGACCTCACCTATGACTTCATCATCAAGAGGAAACCTTTGTTCTACACCATCAACCTCATCATCCCATGTGTTCTAATCACCTCACTGGCCATATTGGTGTTTTACCTGCCTTCTGACTGTGGGGAGAAGATGACCCTCTGCATTTCAGTCTTGCTCGCCCTCACTGTCTTCTTGCTCCTGATTTCTAAGATTGTCCCCCCCACTTCCTTGGATGTGCCTCTAATTGGAAAGTACTTGATGTTCACCATGGTGTTAGTGACTTTCTCCATCATCACTAGTGTCTGTGTGCTGAACGTGCACCACCGCTcccccagcacacacaccaTGCCACCCTGGGTCAAGGTGGTGTTCTTGGTCAAACTCCCTGGCCTCCTTTTCATGAAGAGGCCCCAGAATAACTCAGCCAGGCACAGGCTTCGGCAGCAGCAGCTGAGGGCTCGTAAGGCTGCACTGGGCTTTCCCCCGCCTTCCATCTAcctctcctctgcctcctcttcctcctccccagGGCACTTCTACAAGAATGCCACATCCTTCCTGAACCCAGCTAAGAAGAGTGAGCTGCGGATACCAGACCTCCATGATGGGTTCTCCCAGCCCCAGGACTTCCGGCAGCGGAACACGGCGAGCTATGGGCCGGAGGTTCAGGAGGCTGTGGCTGGAGTGCGTTTTGTAGCCGACCACATGAGGGGAGATGATGATGACCAAAATGTGATTGAAGACTGGAAGTATGTGGCCATGGTTGTTGACCGAATGTTTCTGTggatttttgtctttgtttgcgTGTACATCCGACCGGTGGAGAATGTGTCCGACCCGGTCATTGTGCAGTTTGAAGTGTCCATGTCCCAGCTGGTGAAAGTGGATGAAGTCAATCAGATCATGGAAACAAACCTGTGGTTGAGACATGTGGATGACAAGACCAAAGCCCTGTTACGATATAATGGGGATGTTATCTGGATCCCACCAGCCATCTTCAAGAGCTCCTGCAAGATTGACGTCACTTATTTCCCCTTTGACTACCAAAACTGCACCATGAAGTTTGGTTCATGGACGTATGACAAAGCTAAAATCGATCTGGTGTTGATTGGCTCCACCATCAATCTCAAGGACTTCTGGGAAAGTGGTGAATGGGTGATCATCGACGCCCCAGGTTACAAACACGACATCAAATACAACTGCTGTGAAGAGATTTACCCAGACATCACCTACTCACTATACATTCGCCGGCTGCCCCTTTTCTACACAATTAACATGATCATCCCTTGTCTGCTAATCTCCTTCCTGACTGTGCTCGTGTTCTACCTGCCTTCCGACTGTGGCGAAAAGGTCACCCTCTGCATTTCCGtactcctctctctcactgtctttCTGCTTGTTATCACTGAGACCATCCCCTCTACCTCTCTGGTCATCCCTCTCATTGGGGAGTACCTTCTTTTCACAATGATCTTTGTCACCCTGTCTATTGTCATCACGGTCTTTGTTCTCAATGTCCACTACCGAACCCCCAAGACCCACACCATGCCGCAGTGGGTCAGAAACGTGTTCCTCAGCCTCCTCCCCAGAGTGATGTTCATGACCAGGCCAGAACGAGAACCTGAGAAGAGCCCCCCATGTCTCCCACAACAGCCCTACCCAAACATCCACCCACAGCAGAAGCAGCAGAATTCCAACGCCTGCCATCAGAGACAGCGTCTTTTCATCAGCACAGAACTGTCCAACCTTAACAACATGGCTGGAAGTGGAGACCCAAAGTGTGGCTCTAAAGATGGTTATCTCTGCCAAGAAGGCCGCTGTAACTGCTGCTGGCACCAGCGCTCTACCAAACTACCAGCAGATGGAGGTCTGGGAGCAGGCGGTGGGGGTTCCAATAGCTCCTGCGCCAGCTCTGAGTCATTGGACGcccttctctccatctctgcatTATCCCCTGAAGTGCGTGAAGCCATCGAAAGTGTCAAGTACATTGCTGAAAACATGAGGCTACAGAATGAGGCGAAGGAGATCCAAGATGACTGGAAGTATGTGGCTATGGTTATAGATCGTATCTTCCTGTGGGTGTTCATCCTGGTGTGCATCTTAGGGACAGCAGGACTCTTCCTCCAGCCCCTGCTACTGGGAGACGACATT

Function

GO: NA

KEGG:

id description
K04815 CHRNB4; nicotinic acetylcholine receptor beta-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31882 lncRNA downstream 133828 25252716 ~ 25256361 (-) True G25421
TU31876 lncRNA downstream 142810 25207774 ~ 25247379 (-) True G25415
TU31874 lncRNA downstream 144259 25207774 ~ 25245930 (-) False G25415
TU31834 lncRNA downstream 401135 24988845 ~ 24989054 (-) True G25387
TU31821 lncRNA downstream 408050 24981934 ~ 24982139 (-) True G25375
TU32026 lncRNA upstream 599361 26053764 ~ 26069317 (-) True AMCG00007687
TU32027 lncRNA upstream 599361 26053764 ~ 26070848 (-) False AMCG00007687
TU32121 lncRNA upstream 1544903 26999306 ~ 26999546 (-) True G25615
TU32123 lncRNA upstream 1574568 27028971 ~ 27029294 (-) True G25617
TU32126 lncRNA upstream 1615483 27069886 ~ 27070099 (-) True G25620
AMCG00007675 mRNA downstream 9794 25365037 ~ 25380395 (-) True AMCG00007675
AMCG00007679 mRNA downstream 27792 25359779 ~ 25362397 (-) True AMCG00007679
AMCG00007678 mRNA downstream 34305 25339362 ~ 25355884 (-) True AMCG00007678
AMCG00007677 mRNA downstream 55383 25323088 ~ 25334806 (-) True AMCG00007677
AMCG00007667 mRNA downstream 383359 24989512 ~ 25006830 (-) True AMCG00007667
AMCG00007684 mRNA upstream 176389 25630792 ~ 25631490 (-) False AMCG00007684
AMCG00007683 mRNA upstream 199317 25653720 ~ 25658719 (-) True AMCG00007683
AMCG00007689 mRNA upstream 218202 25672605 ~ 25681857 (-) True AMCG00007689
AMCG00007688 mRNA upstream 408619 25863022 ~ 25895601 (-) True AMCG00007688
AMCG00007687 mRNA upstream 606526 26060929 ~ 26067535 (-) False AMCG00007687
TU31883 other downstream 125238 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 1122268 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 1417524 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4917485 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 5058378 20331513 ~ 20331811 (-) True G24217
TU31949 other upstream 176392 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 9415032 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 11785686 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12040508 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 12113214 37567617 ~ 37569284 (-) True G27437

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_07591686_07596133.mRNA True 2247 mRNA 0.43 5 CI01000000 7590851 ~ 7596133 (-)