RNA id: AMCG00007677


Basic Information

Item Value
RNA id AMCG00007677
length 1509
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00007677
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25323088 ~ 25334806 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCTTGCAGCCTGTAGGTCTCTGACCAAAGTGCACCATGTCCTCTATCGCAGGAATTATTGCTGTACTATTTTCTTTCCATCTGAATATTTTGTCAGCGTCGACTTCAACACCTACACCAAGAGTGAAAAACGGTTAACCTCACAATTTCCAAGGAACCATGACAAGAACCAGTTAGGCATCTGCAATGATGCATTCAAAAGTGAAGGAATTGCTCCATTCTCTGTAAACGACAGCGTGCCATCACTGTTTGTTGGTGATGATCTTTACAGCACCGCAAATAGGTATTCTAATGGAAACAACGTAGGAATTCGCAGGTTTCGCGATAGAAAAGGAGATGTCTGGTCAGCTGTGCCGAAGACAGAGCAAAAGTATATCGGATTGGTCCTGAGCAAAAGACTAGAGGATGAGCTGCACGATAAAATCTACTCTTTCCTCCAAGAGAAGAACGGAGACCAACACCCTGAAGCAGATCCCTGGATCGCCCGCGTGACACAAGTTTGCAGAACCGATATGGGAGGCTCCAAAGTCATGTTGCAGAAACAGTGGACTTCAATTCTCAGTGCCAGGCTTACTTGTGGATTCCCAACTGAGAGACTTTATTTCAACCGACTTCTGGATATCTTTGTTTTACACGCCGATAACTGGAGAGAGAGCAAGGTCTATGGGCTCTTCTCTAGTCGCTGGAATTCGACAGCAGTGTGTATTTACAGCATGGAGGACATTGACAGAGTGTTCACAACATCCAAAATTAAAGGATATTCAGGGACTATCCCAACACCAAGGCCTGGAACGtgCGTCAGAGATAGTACAACGTTATCAAAGGAGGTGTTAGATATAATCAAAGACAACCCGGAGATGGAAGACTGGGTCAAGCCGATTGACAAGACTGCTCCTTTCATGGTCAGCCATAAGCATTATCGGAAGATTCAAGTGGACAGAGTCATGGGCCAGAACAACACATCACACACGGTCAATGGTAGGCCTTTCATCATTGAAGAAATCCAACCTTTTAAAGAGAAGACCCACATCCAGTCCATGATTTTGAATCCTACTACAAAAAAGCTTTATGTTGGCTCTGTTAATGAAGTGGTTCAGATTGACCTACAAAGCTGTAAGCATTATGGGAAAACGTGCCAGGATTGTGTTTTAGCACAAAATCCTTACTGTGGCTGGAATGGGAGTGAATGTACATCAGCAACAGATGTGCAGGAAGAATCTCTCTCCCCCAGTTACTACCTCTCCTGCCCTGTACTCTCTAATAATGCGCAATACTTCTGGCAGCACAAAGGAAGTACGATTGAATGCCAGTTAGTCAATGGGGAATGTGTGTACTTGATGAAGGAAAAGACTAAGGACAAGGCTGGTGAATACATCTGCAGAGCCCTGGAGAAGGGCTATGAAAAGCAAGTGGTACAATACTCAGTGAAGTTCACAAACCGTgccactgcactgcactccaGCTCCGCAGTCTTGGCAAGCATCCTTCCGTTCGCAGCCCTGTACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31882 lncRNA downstream 66727 25252716 ~ 25256361 (-) True G25421
TU31876 lncRNA downstream 75709 25207774 ~ 25247379 (-) True G25415
TU31874 lncRNA downstream 77158 25207774 ~ 25245930 (-) False G25415
TU31834 lncRNA downstream 334034 24988845 ~ 24989054 (-) True G25387
TU31821 lncRNA downstream 340949 24981934 ~ 24982139 (-) True G25375
TU31916 lncRNA upstream 116957 25451763 ~ 25452022 (-) True G25446
TU32026 lncRNA upstream 718958 26053764 ~ 26069317 (-) True AMCG00007687
TU32027 lncRNA upstream 718958 26053764 ~ 26070848 (-) False AMCG00007687
TU32121 lncRNA upstream 1664500 26999306 ~ 26999546 (-) True G25615
TU32123 lncRNA upstream 1694165 27028971 ~ 27029294 (-) True G25617
AMCG00007667 mRNA downstream 316258 24989512 ~ 25006830 (-) True AMCG00007667
AMCG00007668 mRNA downstream 343751 24966872 ~ 24979337 (-) True AMCG00007668
AMCG00007666 mRNA downstream 377292 24934308 ~ 24945796 (-) True AMCG00007666
AMCG00007661 mRNA downstream 512621 24805791 ~ 24810467 (-) True AMCG00007661
AMCG00007662 mRNA downstream 520710 24799840 ~ 24802378 (-) True AMCG00007662
AMCG00007678 mRNA upstream 4556 25339362 ~ 25355884 (-) True AMCG00007678
AMCG00007679 mRNA upstream 24973 25359779 ~ 25362397 (-) True AMCG00007679
AMCG00007675 mRNA upstream 30231 25365037 ~ 25380395 (-) True AMCG00007675
AMCG00007676 mRNA upstream 55383 25390189 ~ 25454403 (-) True AMCG00007676
AMCG00007684 mRNA upstream 295986 25630792 ~ 25631490 (-) False AMCG00007684
TU31883 other downstream 58137 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 1055167 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 1350423 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4850384 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 4991277 20331513 ~ 20331811 (-) True G24217
TU31949 other upstream 295989 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 9534629 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 11905283 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12160105 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 12232811 37567617 ~ 37569284 (-) True G27437

Expression Profile