RNA id: AMCG00007678


Basic Information

Item Value
RNA id AMCG00007678
length 1814
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00007678
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25339362 ~ 25355884 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATTATGAAGTCCTTTTCCTTTTGGGACACTTACTCTGCATTCTTCACAGTACCATTCCTTATCTGCTCAGTTCCCTGTATCCATGGTGGAAAGGTCTTGATTCCCCCAGTGGAGGGCAGCCATTGGGTGAACATGAACATCCTCATTGAAGCCATGCATGCCCGGGGCCACACCATCACAGTTCTCCGGCCAGAGAAAAGCTGGTACATTAAGAAAGAGTCTCCACATTACAGTACTGTCACAATCCCTCATGTTGAAACCATAGATGAacaattcataaaaaatatgatgATACTGCTAGAGATGGATAGAGGAAATTCATCCATGTGGAGCCTTTTCAGTTTACAGAAGGAAATGTTAAGTAAGTTTACTGAAGCTCACAAAAGGATTAGCGGAATGGCAAGCAGTATGTTAGAGGACCAGCAACTAATGAAGAGCCTCCAGGACACTCAGTATGACTTGGTCCTTACTGACCCAGTTTGGGGTTCCCTTGGTTTACAATGTGCGCTGGACTGTGGAAGGAGAAGGTCATTTTGCTATTGCCCCATCACCAATATCCTACATCCCAATAACAGGGAGGTCATCAATGAGCCGTCCTACCGGATCAACATGCAGAGGCTCTCCAGCCTGCACCGGGACCAGCCAATGAAACCACTAGACAGAGCGCTCTACTGGATAGAGTTCGTCATGAGACACAAAGGCGCTGCTCACTTGCGCACAGAGTCCTACAGGATGCCCTGGTACATCTACCACTCTGTGGATGTCATAGTGGTCTTACTGTTATCAAATTACTGTGCTGCAGGGTTTGCTccagaagaaaaAAGGCAACTGGTGAATATGTCAGCTAGTGCCTTCTACTGGAAAGAGTATGTCATGAGACACAAAGaTACCATGAAGACATATAATCTATCAAACACTCTCTCAACCTTTACTTTTGTACTCATTATCGTCACTTTGCATTCTTATGATTGTGGTAAGGTTCTGGTATTTCCAGTGGAAGGTAGCCATTGGGTGAATATGAAAATCTTGATAGAGGAACTGTATTCTAGGGGCCATAATATTACAGTGGTAAGATCATCAAATAGCCGATACATTAAGGAGAGCTCACCTCTCTACATGTCAATCACAATACCTGACAATGCAGAAATGGATGAAGACTTCTTTGACTTGTTCCTGAGCAGGTATCTTGAGGTccaaagaaaagagagaaacataTGGACTCTCCTAACAATGCAAAGGGATTTCTTTCAAATGCTTTCTGAAGCACATCGTGCATCATGTCAGATGGTGACtacaatgtttgaaaataaaccGTTGATGAAAAGTCTGGAGGACACTCATTATGACCTGGTACTAACAGATCCTGCCATAGCCGGTGGAGTTTTGTTGGCCCACTACCTTAAACTCCCCTTGGTTTTAAATGTTCGTTGGATCACCAGTGGGGAAGGTCATTTTGCCATTGCTCCTTCTCCAGTGTCTTACATCCCACTACCAGGATCAGGATTATCagacaaaattaattttatggaaaaaGAGGTCCTCAATGAGCCGTCCTACCGGATCAACATGCAGAGGCTCTCCAGCCTGCACCGGGACCAGCCAATGAAACCACTGGACAGGGCAATCTACTGGATAGAGTTCGTCATGAGACACAAAGGCGCTGCTCACCTGCGCACAGAGTCCTACAGGATGCCCTGGTACATCTACCACTCTGTGGATGTCATAGTTGCTGGTGGCCATTTTGGCTCCAAACTGTGCCGGACTGGATACCAGCTCCCAGACAAGCACTCCCAGataattGTGATGCCTCAT

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31882 lncRNA downstream 83001 25252716 ~ 25256361 (-) True G25421
TU31876 lncRNA downstream 91983 25207774 ~ 25247379 (-) True G25415
TU31874 lncRNA downstream 93432 25207774 ~ 25245930 (-) False G25415
TU31834 lncRNA downstream 350308 24988845 ~ 24989054 (-) True G25387
TU31821 lncRNA downstream 357223 24981934 ~ 24982139 (-) True G25375
TU31916 lncRNA upstream 95879 25451763 ~ 25452022 (-) True G25446
TU32026 lncRNA upstream 697880 26053764 ~ 26069317 (-) True AMCG00007687
TU32027 lncRNA upstream 697880 26053764 ~ 26070848 (-) False AMCG00007687
TU32121 lncRNA upstream 1643422 26999306 ~ 26999546 (-) True G25615
TU32123 lncRNA upstream 1673087 27028971 ~ 27029294 (-) True G25617
AMCG00007677 mRNA downstream 4556 25323088 ~ 25334806 (-) True AMCG00007677
AMCG00007667 mRNA downstream 332532 24989512 ~ 25006830 (-) True AMCG00007667
AMCG00007668 mRNA downstream 360025 24966872 ~ 24979337 (-) True AMCG00007668
AMCG00007666 mRNA downstream 393566 24934308 ~ 24945796 (-) True AMCG00007666
AMCG00007661 mRNA downstream 528895 24805791 ~ 24810467 (-) True AMCG00007661
AMCG00007679 mRNA upstream 3895 25359779 ~ 25362397 (-) True AMCG00007679
AMCG00007675 mRNA upstream 9153 25365037 ~ 25380395 (-) True AMCG00007675
AMCG00007676 mRNA upstream 34305 25390189 ~ 25454403 (-) True AMCG00007676
AMCG00007684 mRNA upstream 274908 25630792 ~ 25631490 (-) False AMCG00007684
AMCG00007683 mRNA upstream 297836 25653720 ~ 25658719 (-) True AMCG00007683
TU31883 other downstream 74411 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 1071441 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 1366697 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 4866658 20471111 ~ 20472704 (-) True AMCG00007500
TU30340 other downstream 5007551 20331513 ~ 20331811 (-) True G24217
TU31949 other upstream 274911 25630795 ~ 25631592 (-) True AMCG00007684
TU33771 other upstream 9513551 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 11884205 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 12139027 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 12211733 37567617 ~ 37569284 (-) True G27437

Expression Profile