RNA id: AMCG00007683


Basic Information

Item Value
RNA id AMCG00007683
length 2111
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00007683
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25653720 ~ 25658719 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATAAAAACGACATATCCCAGAAGCCACTGGGGCTACTTCCGTGCACCGGTGACATAGCGGACTGTAAACAAAGCTTCTACTTTCTGTTTTGGTGATATTTTGTGTTGACGTTTTCTTCCAACACATGctattaatgttaatttacGTTTATTCCTGGCAGTGTGATAACGTTAAATACATTACACCCAGTTTACCGTGTGTAATTTAACGAGCTAATCCAAATACAGTACACGAATTGAAGGTTCAGCTGTAGGAAATCGTTTTGTGTGCAGACTCCCGGTCGCTGTCTTGCAAGtgtagaaacaaaacaaaaatggcccTTCCAGAGTGGCGAATTTCATTGAAGTTAATGGACCAGCCCTCGGTTCCCAAGTCGGTGCTGCAGTTTCCCGAGCCAGAGCCCGGAGAGATGGCACCAGGGGGGTACCGGGTCGCCACTCTCAAACAGCTGGTGGCGGCCCAGTTACCCGATTACATCCCCGATCCCGAACTCATAGAGCTGGTGTATTGTGGCAGGAGGCTAAAAGATGAGCAGACCCTGGAGTTCTACGGGATTCGGCCAGGATCGACGGTCCATATCCTAAAGAAATCCTGGCCAGAACCAGAAGTCAAATCTGGAGTGCTGCAAGACAAAGATCTTTTTATGCTGTTTACTGACCCCAACATGCTAGATACGCTGATCGCGTCTCACCCATCACTGGTCAACGCTATCGTCCTGGTTTTACACTCCGTGGCTGGCAGTGTTCCTCCTCCACAGAGTGCCAGCACGTCCCGCAATGTCTCTGCCAGCTCCTACAGCGACATGCCGGGAGGATTTCTTTTTGAAGGCATGTCTGATGATGAAGAGGATTTCCAACCAGGCAACCGTGCCACCCCTTCAACCAGTGCAGGAGCTGCTGGCACACGCCCGGCTACCCTGGGCTACAGTGGCGCCGTGGGCCCTCGGCCAATCACACAGAGCGAGCTGGCCACTGCTCTCGCCCTCGCCAGCACTCCCGAGAGCAGCGCAGTCACACCCACCACCGGCAATCCGGGAAGCTCCTCCGGGGCCTCACCCGTGATGGGCTCTTCTGGAATGCCTGCTGGGACCCCCATCACCAACGACATCTTCACCCAGGCGCTGCAGCAGGCACTGCAGGTGTCCAGCCTCTCAAGCCTACAGAGCCAGTGGCAGTCTCAGTTACAGCAGTTGCGGGACATGGGCATCCGAGACGAGGAGCTGATCCTGCGGGCTCTGCAGGCCACAGGGGGGGATATCCAGGCGGCACTGGAGCTCATCTTTGCAGGGGGCGCCCCATGAGCTGACAGAGGGTTTGAGGACAAGCAAGGACAATTGTTCAATATCACTTGACTATAAGCATCTGCTTATAAGTGATAGAAATGAATCCACTGATGAGAAGGAATAACGGAAGGAATATTGTAACCAGGCCCGGCCTTTTCCCGGCCTTAAAAACATCCGTGCCAGGAGGGTAGAACTTTTCATCAATGAGAAAGTAATTGATGAGAAACTCTTTTAACTGATAAAATATAAACtagaaataaaagcattttggaaatatgtttatcttttgtgttttaagaCCGCTTtaacaaaaaagttttttttatttaaacctctTGCATGCTTCAGGAGTCtacatcaaataattaaaaacagaataggTTAGTGGTATTATCCTGTCTTCTATTATTGACATATGCAAAGGATACATTATTGTATGTACAGAACACATTATATAAAGAATTGAAGTGTATTGGTTTGTGAGAACAtgcagtcttgttctcttgcaagttctttatttttcttcagttcgGATTAACATTAACTCCCCTTCCAGAGTGTCAGTATCAGTAGTGTATCAGTCCTGAGTATATATCATCATTAAAGTGTTATAGAGGGCAGTGGCATTTGTATGGAACAATCTTTGGCTCATATGATCAGTGTATAGATGTTCTTGTATACAGTCTGCCATATTACTATGCTACAATTGTGTTTTTACCATGGAACaccatgattaaaaaaataaaaaaagtttttgttccttgtttttATAATGCTACACTATACACTTGACCATATCttaccatgtttttaccatggtacaACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31916 lncRNA downstream 201698 25451763 ~ 25452022 (-) True G25446
TU31882 lncRNA downstream 397359 25252716 ~ 25256361 (-) True G25421
TU31876 lncRNA downstream 406341 25207774 ~ 25247379 (-) True G25415
TU31874 lncRNA downstream 407790 25207774 ~ 25245930 (-) False G25415
TU31834 lncRNA downstream 664666 24988845 ~ 24989054 (-) True G25387
TU32026 lncRNA upstream 395045 26053764 ~ 26069317 (-) True AMCG00007687
TU32027 lncRNA upstream 395045 26053764 ~ 26070848 (-) False AMCG00007687
TU32121 lncRNA upstream 1340587 26999306 ~ 26999546 (-) True G25615
TU32123 lncRNA upstream 1370252 27028971 ~ 27029294 (-) True G25617
TU32126 lncRNA upstream 1411167 27069886 ~ 27070099 (-) True G25620
AMCG00007684 mRNA downstream 22230 25630792 ~ 25631490 (-) False AMCG00007684
AMCG00007676 mRNA downstream 199317 25390189 ~ 25454403 (-) True AMCG00007676
AMCG00007675 mRNA downstream 273325 25365037 ~ 25380395 (-) True AMCG00007675
AMCG00007679 mRNA downstream 291323 25359779 ~ 25362397 (-) True AMCG00007679
AMCG00007678 mRNA downstream 297836 25339362 ~ 25355884 (-) True AMCG00007678
AMCG00007689 mRNA upstream 13886 25672605 ~ 25681857 (-) True AMCG00007689
AMCG00007688 mRNA upstream 204303 25863022 ~ 25895601 (-) True AMCG00007688
AMCG00007687 mRNA upstream 402210 26060929 ~ 26067535 (-) False AMCG00007687
AMCG00007693 mRNA upstream 477933 26136652 ~ 26161514 (-) True AMCG00007693
AMCG00007694 mRNA upstream 604269 26262988 ~ 26272450 (-) True AMCG00007694
TU31949 other downstream 22128 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 388769 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 1385799 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 1681055 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 5181016 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 9210716 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 11581370 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 11836192 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 11908898 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 11912238 37570957 ~ 37571488 (-) True G27439

Expression Profile