RNA id: AMCG00007685



Basic Information


Item Value
RNA id AMCG00007685
length 801
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00007685
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25698223 ~ 25708138 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAACGAGAATCCGAGATAAAACTCTTGCCAGTGTCAAGCAAGGGCATTGCagCTGTCTTGGAGATGAAGGTCCCTGAAGTTCCAGTGGTGGCTTTGTTTGGAAAGGACGCAATCCTAAATTGCTCTTTTTCAACGGGCATGACCTTTAACCTCTCAGACCTGAGCGTGTTTTGGCAGCTGACTGACACCAAAAAGATAGTCCACAGCTTTTCAGCAGGGCAAGACCATCTTAGAGACCAGGGTGACACGTACATCAACCGCACCAGCCTGTTTCACAAGGAACTGGCTTCTGGGAATGCTTCTTTGCTACTCCGTGGGGTCAAGATTGCAGATGAAGGCAGCTTCACCTGCTTTGTCCGAATCAAGGAATACCGCAGCGAAGCATTGCAGCTGCAGGTAGCAGCCTCTTACTCAAAGCCCCACTTGGCCCTGAAACCAGAGTCCAACCTGAGAGCTGGGGATGTGGTGGCTCTGAACTGCCACTCCTATGGTGGCTATCCCATGGCCAACATCCTCTGGCAAGACGGAAGTGGAAGAAACTTAACAGACAACGTTACCACATCACAGGTGGCCAATGAACAAGGGCTGTTTAGTGTGCTGAGTGTCCTCACCGTGATGGTGGAGCCCAACAGCAACTACAGCTGCCTGGTCTGGAACGAAGTGTTGGACGAGGTGACCCATTCCTCCGTCACGATTACAGGTCAGTCCCTCCTGGTCCTACTCTACCAAGAAATGTTTCTCGTACAGTCCAGTCCATGCTGGGAAAAGTCAGTATTTACATCTGAGTTTGTGTGGTAG

Function


GO: NA

KEGG:

id description
K06746 B7H3, CD276; immune costimulatory protein B7-H3

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU31915 lncRNA upstream 246430 25451533 ~ 25451793 (+) True G25445
TU31861 lncRNA upstream 377198 25315787 ~ 25321025 (+) True G25405
TU31813 lncRNA upstream 744895 24953125 ~ 24953328 (+) True G25367
TU31742 lncRNA upstream 756643 24934479 ~ 24941580 (+) True G25302
TU31744 lncRNA upstream 786852 24879365 ~ 24911371 (+) True G25303
TU32014 lncRNA downstream 345563 26053701 ~ 26061246 (+) True G25531
TU32051 lncRNA downstream 426223 26134361 ~ 26134577 (+) True G25561
TU32052 lncRNA downstream 428629 26136767 ~ 26142288 (+) True G25562
TU32065 lncRNA downstream 554689 26262827 ~ 26270720 (+) True G25574
TU32092 lncRNA downstream 605225 26313363 ~ 26313565 (+) True G25588
AMCG00007682 mRNA upstream 25072 25535554 ~ 25673151 (+) True AMCG00007682
AMCG00007681 mRNA upstream 163238 25534509 ~ 25534985 (+) True AMCG00007681
AMCG00007680 mRNA upstream 230987 25454680 ~ 25467236 (+) True AMCG00007680
AMCG00007674 mRNA upstream 383314 25304279 ~ 25314909 (+) True AMCG00007674
AMCG00007671 mRNA upstream 441862 25247801 ~ 25256361 (+) True AMCG00007671
AMCG00007686 mRNA downstream 311676 26019814 ~ 26036364 (+) True AMCG00007686
AMCG00007691 mRNA downstream 362621 26070759 ~ 26083421 (+) True AMCG00007691
AMCG00007690 mRNA downstream 388588 26096726 ~ 26115608 (+) True AMCG00007690
AMCG00007692 mRNA downstream 409958 26118096 ~ 26131010 (+) True AMCG00007692
AMCG00007696 mRNA downstream 1451353 27159491 ~ 27179372 (+) True AMCG00007696
TU31514 other upstream 1503742 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 2504702 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 3415265 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 4631440 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 6642090 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 2375684 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 2744871 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 3294957 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 4057690 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 9902978 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile