RNA id: AMCG00007687


Basic Information

Item Value
RNA id AMCG00007687
length 603
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00007687
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 26053764 ~ 26070848 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGAAAAAATCAACAACTTCCCCCCTCTGCCGGGGTTTATTCCCTTGAAGCCATGTTTCTACCAGGATTTCAATGAGATCCCTGAGCAGCACCGCACCTTGGCCAAGCGTCTGTATTACCTCTGGATGTtgaaCAGCATCACTCTGGCTGTAAATCTGATTGGTTGCCTTGCATGGCTGATTGGCGGAGGTGGAGCTGTTAACTTTGGACTGGCTTTTCTTTGGCTCATCCTCTTCACACCCTGCTCCTATGTGTGTTGGTTTAGGCCCATTTACAAAGCCTTCAATGGCTGGATTGCTACAATATCTTTCTTTGGCACTAATATTGGATCTGCAGTGGTCATGCTGATCCCAACAATAATGTTTACAGGCATTGCTGTCATCTCATTCATAGCTCTCACTAagGTGCACAACTTCTATCGTGGCAGTGGAGGCAGCCTGAGCAAGGCCCAGGAGGAGTGGACCACTGGGGCCTGGAAGAACCCCCACGTGCAGCAGGCAGCTCAGAACGCAGCCATGGGCGCTGCTCAGGGTGCCATCCACCAGCAGGAGCCGCAGTATTCTGCCACACCCAACTACTCCTACGATAACCAGATGTAG

Function

GO:

id name namespace
GO:0045956 positive regulation of calcium ion-dependent exocytosis biological_process
GO:0005768 endosome cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31916 lncRNA downstream 608907 25451763 ~ 25452022 (-) True G25446
TU31882 lncRNA downstream 804568 25252716 ~ 25256361 (-) True G25421
TU31876 lncRNA downstream 813550 25207774 ~ 25247379 (-) True G25415
TU31874 lncRNA downstream 814999 25207774 ~ 25245930 (-) False G25415
TU31834 lncRNA downstream 1071875 24988845 ~ 24989054 (-) True G25387
TU32121 lncRNA upstream 931771 26999306 ~ 26999546 (-) True G25615
TU32123 lncRNA upstream 961436 27028971 ~ 27029294 (-) True G25617
TU32126 lncRNA upstream 1002351 27069886 ~ 27070099 (-) True G25620
TU32167 lncRNA upstream 1186694 27254229 ~ 27257033 (-) True G25655
TU32217 lncRNA upstream 1286433 27353968 ~ 27355254 (-) True G25697
AMCG00007688 mRNA downstream 165328 25863022 ~ 25895601 (-) True AMCG00007688
AMCG00007689 mRNA downstream 379072 25672605 ~ 25681857 (-) True AMCG00007689
AMCG00007683 mRNA downstream 402210 25653720 ~ 25658719 (-) True AMCG00007683
AMCG00007684 mRNA downstream 429439 25630792 ~ 25631490 (-) False AMCG00007684
AMCG00007676 mRNA downstream 606526 25390189 ~ 25454403 (-) True AMCG00007676
AMCG00007693 mRNA upstream 69117 26136652 ~ 26161514 (-) True AMCG00007693
AMCG00007694 mRNA upstream 195453 26262988 ~ 26272450 (-) True AMCG00007694
AMCG00007695 mRNA upstream 411496 26479031 ~ 26480878 (-) True AMCG00007695
AMCG00007699 mRNA upstream 1132108 27199643 ~ 27212764 (-) True AMCG00007699
AMCG00007706 mRNA upstream 1225892 27293427 ~ 27307131 (-) True AMCG00007706
TU31949 other downstream 429337 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 795978 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 1793008 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 2088264 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 5588225 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 8801900 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 11172554 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 11427376 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 11500082 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 11503422 37570957 ~ 37571488 (-) True G27439

Expression Profile