RNA id: AMCG00007688


Basic Information

Item Value
RNA id AMCG00007688
length 873
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00007688
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25863022 ~ 25895601 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCTCAGCAGAGTGCAGGCCCGGGACAGCACTGAGACCCCCAGCCAGAGAGAGCGAATTCGCGGTCGCATGAAGATGGTGATTGACCAGCTAGAGGGGATTCTCAAAGAGCTGAAGGAGGTGGCAAGGGAACTCCGAGAGGTGGTGGGGCAGATTGACAAACTGACATCGGATTTTGATTTCGACCTCGAGCCTGATGACTGGACAGTAGCAACAGTGAGCAGCACATCCAGCAGCGAGAGAGGGCTTGGAGATGCTTTCGGACGCCTGGACTTCCTAAATCCAGATGTGCTCTCTGACAGCTGGGAGTTCTGCAACTTCTTGGAGACCCCTTCCCCGACTGCCACCGAGAAGCCAACGGAGGGGCTGGGGAGTTCAGAGCAGGCAGCCTATGCTCAAATGAACGGAGGCATCATCCCCAATGGGCCCATGGTCGTTACACCAGATTCCTCAAGCGAAGAGGCGGTCAGCTCCACACACAGTCACAAAAACTCCCGGTCATCTGGGACAAGGGAGCGAGTACGTTTCAGTGACAAAATCCTCTACCACGCTCTTTGCTGCgatgatgatgaggaggaagaggaggctgAAAGTGGCCCGACGccagagacagacagtgagcCCAGTCCACCTGCTGCCTCTCCAACACCCCCCTCCTCTGGACAGACTCTCCATAACTGTCTTGCCCCTTCCTCGCCTGGAGGAGGAGGGACAACAGCAGGAGCAACGACAACTGAGAAAAAAGCTGTTAACCCAGGCTGCCGGAAAAAACTGCTACGAAACAGCAGCACACAAACTGTCTCAGACAAAAGCACCCAAACAGTACTGCCCTATGTCCCtgccaaacagaaaacaaaggacCAGAACTGA

Function

GO: NA

KEGG:

id description
ko04911 Insulin secretion
ko04727 GABAergic synapse
ko05032 Morphine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31916 lncRNA downstream 411000 25451763 ~ 25452022 (-) True G25446
TU31882 lncRNA downstream 606661 25252716 ~ 25256361 (-) True G25421
TU31876 lncRNA downstream 615643 25207774 ~ 25247379 (-) True G25415
TU31874 lncRNA downstream 617092 25207774 ~ 25245930 (-) False G25415
TU31834 lncRNA downstream 873968 24988845 ~ 24989054 (-) True G25387
TU32026 lncRNA upstream 158163 26053764 ~ 26069317 (-) True AMCG00007687
TU32027 lncRNA upstream 158163 26053764 ~ 26070848 (-) False AMCG00007687
TU32121 lncRNA upstream 1103705 26999306 ~ 26999546 (-) True G25615
TU32123 lncRNA upstream 1133370 27028971 ~ 27029294 (-) True G25617
TU32126 lncRNA upstream 1174285 27069886 ~ 27070099 (-) True G25620
AMCG00007689 mRNA downstream 181165 25672605 ~ 25681857 (-) True AMCG00007689
AMCG00007683 mRNA downstream 204303 25653720 ~ 25658719 (-) True AMCG00007683
AMCG00007684 mRNA downstream 231532 25630792 ~ 25631490 (-) False AMCG00007684
AMCG00007676 mRNA downstream 408619 25390189 ~ 25454403 (-) True AMCG00007676
AMCG00007675 mRNA downstream 482627 25365037 ~ 25380395 (-) True AMCG00007675
AMCG00007687 mRNA upstream 165328 26060929 ~ 26067535 (-) False AMCG00007687
AMCG00007693 mRNA upstream 241051 26136652 ~ 26161514 (-) True AMCG00007693
AMCG00007694 mRNA upstream 367387 26262988 ~ 26272450 (-) True AMCG00007694
AMCG00007695 mRNA upstream 583430 26479031 ~ 26480878 (-) True AMCG00007695
AMCG00007699 mRNA upstream 1304042 27199643 ~ 27212764 (-) True AMCG00007699
TU31949 other downstream 231430 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 598071 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 1595101 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 1890357 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 5390318 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 8973834 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 11344488 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 11599310 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 11672016 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 11675356 37570957 ~ 37571488 (-) True G27439

Expression Profile