RNA id: AMCG00007690


Basic Information

Item Value
RNA id AMCG00007690
length 7400
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00007690
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 26096726 ~ 26115608 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGTCAAACTGTCATGGGACTTATTACCACAGTCTCTCTGCAAAACACTTGGAGGCAGGACGAGGGGAACCTGGACAGGGACCTAGACCAGCGCTTCTTCTGCAGCAACCGTGCAACCATGTGGACCTAATGATCTGCTCTGGGGAACCCAAGCCAGGCGCTATCGAACCGGTCCAGAGCTCCAGTCCCGGTCATTAAACTGAAACATGTGTTTGATGGATACAACACGGCAACGTTGTTTGGATAAAAGCGGCAGTAAAAGGATCTTCATTCTTCTGATAAAACTTCAAAGACTAAAGAAATTATGATGAGCAGTAAACAGACATTGAGCTACATGGATCCTGTGGTCCACGGCAAGGTGCCCAGACTAGAGAAAGGTGTAGGTCATATGGTGTCAGCGGGCCTTTGCAAACCAGGAAACATGCAAAAGTATTCCCTTGAGGATCCCCTAAACTATAGTGGGACTTACTTTACCTATTGCCTAACTGGGCAGGATGTGACCGAGCTTCCTCCTCCTTGGAGTCCCTCAGGTTCATGTTTGCAAAAAGGAAGAAATCCTGTTATTCACCCTTTAAGTGCTGAAAGTGCATTACCAAACCGATTTGTATATAGGTCAGAAGACCTTGGCTTTTCCACAGAAAACAACCCCCCCGTGGCTGTACAGGACATGATtgcagcaaaagaaaaatgtgcgTATTTTGGtaaaagtcagcaaaatgtaAAGCATAACCCTGGTGCACCATCAATCCACACTCCAGTGGCTGTTAGAAAGTTAGCTGTTGGAGGTACCACTGTGTCCTCTCAACCTGAAAACTCTGTTGGCTTGGCTATTCCTAAACCTATTTATGGACACGGTCCTTGCTGTACTGACCATGGATGCAAATCAAGAGCCTGCTACATTGAACGTACGACTGACCAAGTCCAGCACAGTTCCTATGAGGAGGAATGGCGACCAGTTTCAGGGCTACATTATGGTCCCATGTTTCCCATGGAGAAACGAGAAGAATTATTACAACAAAGGGTCCTTCAACTTGAGCAGAATACGGGCAGGAGGTTTCCACCAAAAGAAGCAAGTCCAGAAGGTTTCCGTACAATTAGACCAGCTGAAGCTGTAAGGCTGCCAACCTTCATTGAGCCAGACTACCGTCGCTTGCCATATGACAATATACCCCGGTCATACTCTAATCCTTCCAAGCACCCTTTACAATTTCCCCCCAAGATGTATCATGGTATCTTGCCATCTTCTTCAAGGAATTATGAAGACATGCAGAAGGTACCTCTTTCTCACTCTCAAATTCCACCAAATGTGTACCAAGAGAGGTCTCCTGTTTCCAGCTACCCCCAACTACCTCAGAGGCATGTATTTTACTATCCTCAGGAAAATGTGGATCTTGAGAAAGGTGCAGCTTACAAAGACCTCAGGGAACAGCGAATGGAGGAAGCTTCCTCCAATCTTAATAAGCAGAGGACCCAAAATGTAGCAGAACAGTATCTAGTGCCCCAGCCTTTCTATAGTGAGGTTCCGCTTCCATACCACATGATTTCCACAAGTGTTCCATTCCATAGAGACTACGATCTTGCACCCTATTCAGTATACAAAATGCAGCCCAGCGCAGGGCGTAAGAGGGGTTTCCCTGAAGAATCTGGGTCTCCCCTTCAAATGCACCTTACTGATCAACCTATGGATTACTCCTCACAAAAAGTCCAGATGACCTCTCCCTCAAGGGAGCTTAATAGGCATCGGCGTACTCCTGGGGCTTTTCATCCGGTGCATGCTCGCTCGGTGCATGTTAACCCAGAACATGTGTCTTTTGAGAAACAATTGGTTGTAAATTCTAGAACAGAAAGCGAACCTTTAAGTCCCAAAAGAGGCATTCCCTACTCTGTAATCGAACACCATAAGGAAATGACTCTTCCAGTAGGCCCAAATACTGATAGCGGAGCAGGTCGTGTCACCGCTTCTGACAACCGAAGTTCTAAAACAAAAGCCATGGAGGACTCGGAAAAATCCATTGTAATTAATTCAACCCCTACAGAACCAAGTGATGATTTATACGAAGTTGCAGTTTCTAACAAACGACATGAAAGAAAGACATTGCACAGACATGATGCAGATAAGCTCCAACCTCCTCGTTCACCTCCCATGCCTGtaattaacaatgtttttagcTTGGCTCCTTACAAAGCGTACCTAGAAGCCTCAGGAATGCTGCCTATGCCAAACAGTGTAAAAAGTGTGTCACATTATTGTCCACAAACATCTGACCAACAAAGGCTTAAGAATGATCCCCAACAAACAACATCCACACACGGATTGAGTCCATCAATGTGTGGAAGATCTGAATACAAGAAAGAATTGGAGGACATTGAGACAGCTGACTATTTAAATCCAGAGCAGAACACACTACAGGCTGATGAGAACAAAAATGATAACCTGCAGCAAGACCTCAAGGAAGAGGGTAATGCAGATTTGATGAGTTCACCAAACTGTCTTCATAATATCAAAGTCCTTGATCTCCGTGTGAAAAAGACTAGTGATTCTGGCAGCCAGGCCCAAACGTTAACAGACAGTTCATCAGGAATTCATTCAAACACCTCTGGGACGAATGGCAACAATGGTCATGCATCAGGGACTGCTAATCTTGATGGTTCCAGAGGTGTCAGCATTACCACTTTCAcgcaaaataaatatcacattcTTACATTGCCACCTCCAAATCCTGAAACACTACCTCATAAACCCAGTGAACCAAAAATAAGTGCCTTTAAGCAACTTTCTGCCCAGTGTCTCAAACTGCCCACCTTTAAGATTATCCTGCCAGACACCCATCTACCTATCAAGCCTATTCCTTCAAGTGGTCAAGAATTACTATCTGCCTCTACGGAGTCCAAGAGCAATAATAAGACTTATAAACACACTCTGCCTTATTTTATGGAACTTCATCAGTCTCTCTGCAGCCAAATTGCCAACTCGATTACCCACACCCCAGAAGAAGAATTAAGAATATGGTTGACAAAGACAGAGGGAAAGACTGAGTCTGGGTCACCCCCCACCAAGAGCCAGAATATCTCCTCTATTATGGGTGCCATAGGGAGGGAAGCATGGCTGAAATTCAAGGAGAATGCTGTGGCACTCCGAAGCATCCTTGACCAGTTGGAGAACTATATTTCTGAGAAGCAGTGCCCATTCCCTCATGTAATGCGGACAGGGACTATTTTCATTCCAATGCTAGTGGTGAAGGAGTCTCTCTTTCCTCAAGTCCCTGGTTCCTCTATTGACCAGGTTCTGCAGGAACATCGTGTGGAACTCCGGCCCACTACCCTTTCCGAAGAAAGGCTTCTAACGCAGCTTCAGAAACGTGGCTGTTCTTCCAAGCTTAGGCGACTTCTATCCCTCAAGCAGCTCCCAGACATTTACCCTGATGTGCTCAACCTGTACTACCATTCCTGTGTCAGAGAGCACCTAGACCCTTTTGCTGCGAGTTGATTCCACTTCATCTGCTGGCCTCCAAATCTCAGCCCAgGGGAAGAGCCCAACACCACTGTGAAAACTGAGAAGGAAGAACATCCAGAAGAGACCTTCCCCCTGTCTAAGAGCAGGGCAAGTTTCCAAACTATGCTACGAAAACATGGATCAGAGTGCAAGGGGGGCTTAATGGCATTGAGAAGAGGCATTTGCTTCAAGACTCAAAGAAGGAAAGGCAGAAGAAAAAGTGCCTTAAACAGAACCTTTTTGGGGAAGGATAATTTAGGACAGATTGTCACATTCTCAGCTAATTTAGAAAATTCAAGTCTGGAAAACTCTGTTGAACAGGATTGGGAAAGGCCTGAAAACTGTCTGGATGGTGACTGCAACAAGCTTGATGTTAAGATTGAGGATGTTTCTTCTGAGGTGGTAGAGATCACAAAGAAGGAGCCAGAAAGCAGCTCTCTTTGGGGGCCAATTACTTCAGATCTTTCCTCTGAGAATAGTGATGCTGAGATGGATGAAACCTTGATGGACCAAGGCAAAGCCTCTAAGTTAGCGAGGGGACTGAAACAAAAAGAGATGGCACCCAGTGGGGAAACCAAACCACAGGTTTCCCTTTTTTCGAAGTGCCACTCCAGTATGGTACTGAAGTTAAACGCTCTATTCAAAAAGAATCCCATTGTAAGAGACCGGACTTCTGAAATACAGTTGCAGCCTGCCAACTCGATAACGGAGGCAGGCAGAGAAGATAATGAGCGTGTGAAGGGTACGCCTAGAAGACTCCATTCACGAGGGTCACAGCAGAGGCAGAGGGTGCCTGGAATTGCTGAAGCTCTGCGTCCTACACGTAGCACCTCAAAGGTCTTGCATCTTCGCAGTTCAATGGTGCAAATCAAGTTCCGGCGCTACCTAACGGTGCAGCGCACTGTACTGCGGCACAGTGCACAGCGGAGGAGGAAAAGGGTGGTGCGGTCAGCTGTCAGAAGGGTCAGGCAAGCCATGAAAACCAGCTATCCTGAGCTAGTAGGGAAGCGTATCCGACACCTTTATGAGGAAAATGACAAGTCAGAGGTGTGGTACCGTGGGGTGGTGATCCGCGTACACGAGCCACACCCAAACCCCTTAAAAACTGTTTATGAGGTGAAGTATGATAGTGAGCCAGAGTGGCAGTACTACTTAGAGCTTCTTCTGGATTACAAGAAAGGATGGCTCAAACTGGAGGACTGAGGGACTctggatttgtgtgtgtctgtgtgtgacaaTGTTCTTGTGAATATTGGTGGAACGTTAGTTAAATGgtactgttttttgtattgcctGTTCACTGTGTTCATCCTGAAGATCAGTCTCAAACTGGGGCAAGCAAAATAGCAAGTCTGAATCAGTAGGTTTTCTAAAACCCTTATACATATGTCCTAGATCTAAGGAAATACAAATGGTGTACAAAATGACAGTGTTTCATTAGCTGtgcaaaaatgctttaaagaaaCTCATGATAGTTATTGTAAATAGATTAAATTCCCCAAAACATTCCTTTCTCAGAAACTCAGACAAAACTCTATTTAAATGCCTTACAAACATTCATAAAACTCGTATATGCAAGTCAATAATTTGAATGAGCTTCTcaattcagttaattatttttcccTTATGAGGGACCACACAGTGATCTAATGTTGGACAAAATGTCTGTCTTCTCTGTGCAAATCTCGACTGCAAGGATTGAAATGTGAACAAgatagtgttttttttcaagACCGAGGGTTTCGATCTCAGTCATTAAGATACATTCTCAATGTGGGTGAGCACTGTATagtcttaaatattttatatgagAATTTCACTGTGACTCAGAACCAcctttgcatattttaattgaaatcaaaaCAGGAAACGGTATGAAGTATACTCGGGTGTTTCTGGCATAGTATAACttgaaacattttgatttaaaagatACATGTATAAGCTCAAAGATGTGCAAGCAGGAAAGGTTTTGGAGATGCCCAAGAATTTCTAGGTTTAGTTTTTGCTTCCATACTACATTATGTAGAGCTACCAATTGGCCCAAATACCTCTCAAATCCTtataatggggggggggaaacttAAAGGGATAGTGGCCACAAAGCTTTTGGTATTTTCAGTGTGACTGCACTGTAGGTAGCTGGTTATGTTATATCTTCTATATTCTCCCACTGATGAATTTAGAGCTTGAGCAAGCATGCATTCGCTGCACAGAAACAAATGTGACTCAACAGGTTTGTGAGCtggtttttaataatttcacagTAACAATGTAAACCTGCTACTTCACAAGATTGGGGGTTCTCTGCTTATTTATACCTGTAACAACATGTTTGGAGGcatttattaaactgaaaattattttgtagtttGGATTTGATTTGGAAGGTCATTGTGGAAATATCACTGGATGCAGGAAGAAGTTTTCAACTACGAGTCCAAGCGGCACCAACTAATGATGcccattaaatatttttattattttgggggggattGGATGGcgttatattaataaatatcttattctctcattcattcataatttcatTTCCAATATTGGTGTTATTCCCATAGGGAGGGTCTCTTGTCTGTGTACGCCAGTGGTAGGCAACCAGACTCCTGGAGGACTGCAATATCTTCCGATTTTGGTTCCAgctgaatatattatttgttgaaACTACATATTGTGCAtctaaatgattttattttctgtttgaataTGAACACATCATTACAGTATGTTTTAAATTCATGTCCGAGAGGTTTTCATCATTGCACATCACTTAAATCATGTTTAGTACCAATATCTCTAGGGCAGAACAGGAGCCATAAGCCATAAGTGGCTTATTGCCACATGCACGGAGGAGTTTTATATGGCTTCTTCCCTGTTTTTTAAGAGTTCTAATTCATGGTCAATGGAACTATTCTAGcaccatttaaataaaagctgGGGCAAAGTAGAGGCTAGATAATAAAACCATGTTATGGCTGAACCACTCTGTAGTCTAAGCATTACTTTACTATTTTTGCTCCTTGCTGCTGtttgattaattgaaatgtcTACTCCATTTCATCATTGATTGACACTAAAGGTCTTTTGGACATCCATGAAACTAAAGAGTCTATATTGTCCTGAACTCGAGCAAACAAGCTGGCTTTGACCTACAGGactaataaaagtaataaaatcatCCTGCCTTACTAAAATCCAATTACCTGCAGCAAGCTGAGAATTAGCTTGAACTGCTATCAAGGTGTAACCATGCATCAATAAAGTTTGAAATTTTGGATATTGTTAAGACAGCATATGGTTGTCATTGTATGAAAAGCTTCCTTGAAATAGTGTCCAAAAGACCTTTTAAGCATTGTACAATCAACATGAGGacaatagtgtttttttttaactgaagtaAATCGGGGAACCTATCTTGCATGTGAGCTTTACTATTAACAAgtcatatcatttttttttttttagcatcaGTGTAACAATGCAGTTGAAAAGTCAatctgagaaaatgtattagtaTGCAACATTGTTTTACTTGATATTGAGcaaatgtgtaaaaacaaataaaaaaaactgaagcatATCTGAAAATGACTGAATACTTGTtgaaagacagagggagaatCTTGTTAACATCAATCagtgcagtgcattctgggcatCTCTGGTTTAATTGTCAATATTATTTCCACCTCcacttttatacttttaaattattgttgaGGTTTTAAGCTTTGTATTTGTTCTCCTCTCTCaatcatgtattgttttataaattgtttaagGCGGTCGCAAGAAGAAAAATCCTTTGATACTGCGATTGTGCTTGTAAAATATACTTCCTTAGCTAATCATTTTGTAagggtttaaaataaagtttttgaaTATACATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32014 lncRNA upstream 35480 26053701 ~ 26061246 (+) True G25531
TU31915 lncRNA upstream 644933 25451533 ~ 25451793 (+) True G25445
TU31861 lncRNA upstream 775701 25315787 ~ 25321025 (+) True G25405
TU31813 lncRNA upstream 1143398 24953125 ~ 24953328 (+) True G25367
TU31742 lncRNA upstream 1155146 24934479 ~ 24941580 (+) True G25302
TU32051 lncRNA downstream 18753 26134361 ~ 26134577 (+) True G25561
TU32052 lncRNA downstream 21159 26136767 ~ 26142288 (+) True G25562
TU32065 lncRNA downstream 147219 26262827 ~ 26270720 (+) True G25574
TU32092 lncRNA downstream 197755 26313363 ~ 26313565 (+) True G25588
TU32138 lncRNA downstream 1075561 27191169 ~ 27191379 (+) True G25631
AMCG00007691 mRNA upstream 13305 26070759 ~ 26083421 (+) True AMCG00007691
AMCG00007686 mRNA upstream 60362 26019814 ~ 26036364 (+) True AMCG00007686
AMCG00007685 mRNA upstream 388588 25698223 ~ 25708138 (+) True AMCG00007685
AMCG00007682 mRNA upstream 423575 25535554 ~ 25673151 (+) True AMCG00007682
AMCG00007681 mRNA upstream 561741 25534509 ~ 25534985 (+) True AMCG00007681
AMCG00007692 mRNA downstream 2488 26118096 ~ 26131010 (+) True AMCG00007692
AMCG00007696 mRNA downstream 1043883 27159491 ~ 27179372 (+) True AMCG00007696
AMCG00007698 mRNA downstream 1099162 27214770 ~ 27226777 (+) True AMCG00007698
AMCG00007697 mRNA downstream 1120386 27235994 ~ 27253888 (+) True AMCG00007697
AMCG00007700 mRNA downstream 1146897 27262505 ~ 27280545 (+) True AMCG00007700
TU31514 other upstream 1902245 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 2903205 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 3813768 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 5029943 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 7040593 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 1968214 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 2337401 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 2887487 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 3650220 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 9495508 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile