RNA id: AMCG00007692



Basic Information


Item Value
RNA id AMCG00007692
length 1212
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00007692
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 26118096 ~ 26131010 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGAATTTGCTTAcaagattaatttgaaaaaaaaaaaagtttacctTATAAGTCCTATTGTTACCATCTCAAACTAATAATGATAGGAAAGCCGATTTCTCCCACCCACACGCATTGTAATGCTGTCTAATTGAACAATTACCGAGGCTATTTAGTGGGGATGAGGAACCCAAGTGAGGATGGACACATCTTGCGGTTAAGGGGTAAAGGTGTAGCAGTTGTGGAAGGAGTGCTGAGGTTTGAGTATGGAGCCCAGCTCCCCACCAAGTCTGACATTGTCCGAACACTGGTCACATTTGCCATTGAACAATCCATAGGGTCCAGGAAGTGGAAGATTGATGTGCATTCTATTCGATCAGGCGGGATCAGTCCATCTAACCTTGCCCCAGAAAAACTCCCCTTCAGGTTTATTCAAATTCATGATGCGAGTCTTGCCTCTATTTCTAATGAAGATGACCGCCGGGGACTGAGGGCTCAGGTGAAACGAGCAATTGAAACTGGCTTCCCAGTAGAGTCTGTGATGTTTGATGAGATCAGTAACATCTATGGCGATATTGAGGTTAAAGGTGCTGCTTTTCTCAACACAACCTTCCATGTGAAGACCCAGCTGGTTCTGCAGCATCTCTGCGGTCAGTGGAACCAGTTTGTGGACCTGACCACCCTCATCATCCGCGGGGAGGCTGCAAACCTGGAGACTATTCCACTGGAGTTCACTATTCTGAATAAGGAATACAACTCATCCGTGCTGGATCATTCCTCCCGATACTACAAGTCCCTCAGAAAAGAAGTCAGCCACAGTGTGTACTACGTCCTGAAGCCAAAGTTTGAAGCCTTGTTGCAAGTTGTAGTTCGCAATTTTTTgAGGGGTTCAGTCCTGGCAAAGACTGAAGTGGTGTTTCTGCGTACCTCTCCACATCCTGAAGACGTACTGTCTTTGATACTGGATTCTATCAATTCCAAACAGATCCTGAATGAAACTGGTCTGCAAATTGATCAGTACTCTGTCAGGGTTGTAGatatgaAACTGGATCGACCCGTGCAGAAAGAACATTTTCCGGGCTTTGGAGTTGCAATTATTCTCATGTGTGGGATAGTGATCCCAGTGTTGATTTGTATTGCTGTGCGGTTTAGAATCTATCGGTCCTGCAGAGCAAATACATTCTCGGCCATGGAGAGGTCTTCAGAGCGGGTAAAGTGTTTTCCGTTCTCATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU32014 lncRNA upstream 56850 26053701 ~ 26061246 (+) True G25531
TU31915 lncRNA upstream 666303 25451533 ~ 25451793 (+) True G25445
TU31861 lncRNA upstream 797071 25315787 ~ 25321025 (+) True G25405
TU31813 lncRNA upstream 1164768 24953125 ~ 24953328 (+) True G25367
TU31742 lncRNA upstream 1176516 24934479 ~ 24941580 (+) True G25302
TU32051 lncRNA downstream 3351 26134361 ~ 26134577 (+) True G25561
TU32052 lncRNA downstream 5757 26136767 ~ 26142288 (+) True G25562
TU32065 lncRNA downstream 131817 26262827 ~ 26270720 (+) True G25574
TU32092 lncRNA downstream 182353 26313363 ~ 26313565 (+) True G25588
TU32138 lncRNA downstream 1060159 27191169 ~ 27191379 (+) True G25631
AMCG00007690 mRNA upstream 2488 26096726 ~ 26115608 (+) True AMCG00007690
AMCG00007691 mRNA upstream 34675 26070759 ~ 26083421 (+) True AMCG00007691
AMCG00007686 mRNA upstream 81732 26019814 ~ 26036364 (+) True AMCG00007686
AMCG00007685 mRNA upstream 409958 25698223 ~ 25708138 (+) True AMCG00007685
AMCG00007682 mRNA upstream 444945 25535554 ~ 25673151 (+) True AMCG00007682
AMCG00007696 mRNA downstream 1028481 27159491 ~ 27179372 (+) True AMCG00007696
AMCG00007698 mRNA downstream 1083760 27214770 ~ 27226777 (+) True AMCG00007698
AMCG00007697 mRNA downstream 1104984 27235994 ~ 27253888 (+) True AMCG00007697
AMCG00007700 mRNA downstream 1131495 27262505 ~ 27280545 (+) True AMCG00007700
AMCG00007701 mRNA downstream 1186529 27317539 ~ 27324818 (+) True AMCG00007701
TU31514 other upstream 1923615 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 2924575 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 3835138 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 5051313 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 7061963 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 1952812 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 2321999 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 2872085 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 3634818 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 9480106 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile