RNA id: AMCG00007693


Basic Information

Item Value
RNA id AMCG00007693
length 9683
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00007693
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 26136652 ~ 26161514 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCGCCTGTAATACATTCACAGAACACGTGTGGAAACCAGGCGAGTGCAAGAACTGCTTTAAACCTAAAAGCCTGCACCGCCTGGCTGAGGGGGGTTTAAAGAAAGGCGGACAAGAGCAGCCGCAGCAGAATCAAGACACTTCTGGGGTTAAGCCCAACGCCAACCTAACAAACAACTACCAAAGGGGTAGTACACGCTCTGGACACTTCCGCCCCCCTGTGGCCAAGAAACCCACCATTGCTGTGAAGCCAACCATGATGCTGTCCTGTTCTTCAGCTGCCCTGGATTCAGAGAGCAACCACGGGCAATCGGATACTGCTGAAATAGGGAAAACCTCTGCTTTTGTGGTGTGGAACCGCAACGGGATGAACCGAAAGAGGCCTGACCTCTTCTTTGGCCGTATCAGTAGCTGCTATAAGCGCTCCTTGGAGCGAGGTTTGCCAGCATCCAGCTGTTTGGCAATTGGTAGTGGAAATGGAGTGTCTCAGAAACAAGTTTCTCTGAATGATAGCACGGAGGTGATTAGCTCAGAAGGTGGACGTTTCTGTTACCCAGATTTCTCCAGCGACGGTGAAGAGGATGAAGAAGATGGTGAGGAAGAAGGAGAGGGTGAACATGAGAGCTGGGATGAAAGTGATGAAGAGCTTTTGGCAATGGAGATCCGAATGCGAGGGCAGCCTCGCTTTGCCAACTTCAGAGCCTCCACCCTCTCTCCTGTGCCCTTTGCTGCGGGCAAGAAGTGGAACACCGTGCCACTCCGCAACCGCTCCCTGCAAAGGATCTGTGCTGTGGACTATGATGACACCTATGATGAGATCCTCAATGGATACCCTTCAGAGGATTCCAATGGGGTTCACATATTTGGCCCTTATGGCCAGGGGGACCTACAAGGTAGCAGCTTCTTCTCTAACTCAGAGTCTACAACCTCCCCTGAATCATCATCTTCTCTCCCAGAAGATTCCCGAACTACTTCCAGCAGTGGCAGTAGTGCCCCTTGCCGTCTACCTAATGGTCTCCCCTCACCTGCTGCATCTAGGGAGCCAGACTTTGAAATGGTCACTGAAAAAGAACAGGCTTCCAGAGTAGTTAGGTCCTGTAAAGCATCAGAGACCCACAAAGCAGTACTAGCAATACGACTTGAAGACCAGGATGGAGGACAGAAGGAGGGAGGAGCTGTAAAAAGCCCTTCCCTTCCTCAAGCCCTTCCTGGACAGCCAGTCACTATCAGCTTCAGCCCTGGAGAAGAGCAGGCCAAGCCCTATCGTGTGGTCAGCCTTGAAAAGCCAGCCATGTGTAAACCTTACACAGTGGTGGATGTCTCTGCATCCATGGCCAACACTGACATTCAAAGCCAGGACAGTGTTCCTAAACCCAAAGGGTCCTCATTCACCACAAGCCCTGCTTCCACACCTAGCTCTCCCTTAGGGcagcctctctctcccacttccCCAGCCTCTCCAACCACTGTATCATCCTCCACTGCACTCAACACCTCCCGAAAGAAATCAAGTGCCATCCGGTACCAGGAGGTATGGACTTCCAGCACAAGTCCCCGTCAGAAGATACCCAAGGTGGAGCTAGTGGGAGGGGGTGCTGCAGGCCCAGCTGTTCCCCCCAGGCACTGTAGCCACAAGTCTGCACCTACCTCCCCTACAGCTGGCCTTTCTTCTTCCTCCCGTACCGTGCCTGTGAAGTCACCCAACCTGTCAGAGATCAAATTTAACAGCTACAATAATGCTGGTATGCCTCCATTCCCCATTATTATTCGCGATGAGCCAACCTATGCTCGGAGTTCTAAAAATGCCGTTAAGGTGCCCATTGTCATTAACCCCAGTGCTTATGACAACCTAGCTGTTTACAAAAGCTTCCTTGGTCTTAGTGGAGAACAACCACAGACAAAACCAGGTTCAGGATGTAGAGTCTCTAGCCATACTTATGAGGAGATTGGATCCTCAGAGAGTATGCCATCCTCTCCTAAGGATACAACTGCTAATGGCAAAATATCTGCAGAGAAAGTTGCGGGAGAAGAAAGGAAAGCAGGCAGTGTTGCACAGAAGATCCAGGAACTCATTGCAGGAACCACTACAACTTCAAATACTACAACAATTACTGGtactactacaactgcagtCAATACTCAGGGAGGCTCCCTAGCCAAAACCAACACTGCTGCTGCCACTCCTGGACGCCATCGAAAGGTGAGCGGTGAATCAACACCTGGAAAAGAAGGCAACAGTGATCTGCCATCAACAAGCACTGGCCCTGTCCATCGTGAAAAAGCCAGTACTGTTCTGTCACAGATTGTGGCATCAATTCATCCACCACAGTCTCCACCAGAGTCACCCACAGTGCAGAGCAAAACCTACAGTGCTGAGGAGCTTTACTCCCTCCCACCTGATGCCACTAATGAAGCTCCAATAAGACCCAAATCACTTTTCTCTCCAGCTGAGGGGTGCCTTCCCAAACCTCGGAAAGACACACCTGCCAAGCAGCTGCCAAAATCCCAAAGCACCACAGCTGCCACTCCAACAAGTCCCAAGTCCGAACCCAATGCCCCCTTCCCACCTCCTAGATCCACTTCCTCGCCATACCATGCCAGCAATCTGCTTCAGAGACACTTTGGTAACTGGtccaaaccaacaacaactAGCCCCACACGGCCAAATGAGGCTGAATCTGCCCAGGGAGGAGAAGGCAGGAGGGCAGCAGCAGAGAGTGCCAAGCCCAAACGCTGGATTTCCTTCAAGAGCTTCTTCCGCCGGCGGAAGGACGAGGATGAGCAGCAACGAGAGAAGGCTGAACGTGAGAAGGAGAAGGGCAAGTTAGTGGGACTGGATGGCACAGTCATTCACATGCTTCCACCTCCCCCAGTCCAGCGGCACAACTGGTTTGCTGAGGCCAAGACTGATGATCCCAATCAGAAACCCACCATCATCTTCACCTATAAGCCAGAGCTTAGTGTTGCAGGTGAAGGGGAGTCAACCCAGACACATGAAGAGGAAAGCAAGCAGAAGTCCCTGGAGAGGCCAGAGCTGAAAGGAGAACAATCTACAGGACATCCACTGCAACAGAAGACTGCCAGCCATGTGCCAGGAGAGGGAAGTGGGAGTGAGATGCCGGCTGCCACCCCACTCCCTACCAAGCTTGAGTTGCCCCCAAGAGACGAGCCAGTGAGCACTGCCTTTACACCGCCCTCTGTCAGTGAGGGCACAGGGAGCCTGGAGGAGCGGGACGAAGAGGGCAGTGACTCGCCTGCTTCTAGCACCTGCAGCGCCACCTACAGCAACCTGGGCCAGTCCCGGGCAAATATGATCCCACTGAAGCAACCCAGGAATCCAAAAGCCTCAGATGATACTCTGGCTTCAGCAGAACATGAAGGTTCAGACAACGGTTCCAAAGCAACACCCCCCCCACTGCCGAAGAAAACCATCACACGGGCCCAAACGGAGCCCTCTGCATTGGGTAAAGATGCTCCTTCCCTGAGACCCAAAGGGGAGGCTAAACCAGGGGGCACGAATCTGAGTGTGGCAAACCCCCTGTACGACCTGGACTCCACCTGGGAGACGGCAAGCCAGAGCTCCTCTCAGAGCTCCGATGCCCGGCTGCTAGACCAGGAATCTGGAGACTCGTTGGAGAGACCAGCTGTTGGAAAGGGGAGGCCGGCCAACAGCCTGTCCTGTCTGACTTCATCCAACACCACTGCTACAGGCCGGGACCGGAGAGGCTGCCGCAGTGCGGAGTCTCTGGCTGTCCGGGGCAGGATGACAGGCAGGGGAGGAGTGTCCAAACCCCAGAGACAGGCACTGTACAAGGGCATGGAGAACTGGGAGGAGGTGGTGGGCCGCATTCGGgggctgcacacagacacactgcgcaAGCTGGCCAGCAAGTGTGAGGACCGCTTCATGGCAGGACAGAAGGACCAGCTGCGCTTTGGCACAGACAGCTGGTCAGATTTTCGTCTGACTACTGGCAAGCCATGTTGCGAGGCAGGTGATGCTGTGTACTACACGGCCTCCTATGCCAAGGACCCCCTTGTCAACTATGCTATCAAGATCTGCAAAAGCAAAGTCAAGGAGACGCAGCAGCAGTTTTTCCACAGTCTGGCTGTGAGACAGAGCCTGGCTGTACAATTCAACATCCAGCAGGACTGTGGCCACTTCCTGGCTGATGTGCCAGTCCGTCTCCTGCCCTGGGAAGACCCTAGCACtcctgaggaagaggaggaggaggaggatgaaaaagAAGCAGAGGAGCAGGGCACAAAGATCAAAAAGAAGATCGAAAAACCAACAGAGCCCAAGAATCCAAGCCACAGTTCAAAAGCCACAGGACACCCAGGTGGCACTGGGACCTGTGGAAAACTGCGCAGCCGTGTAGTTGTGATCACCCGGGAGGTGCCCTACCAAACCGTGGCAGACTTTGTGAGGGAGGGGGTGTCACGGCACGAGAGGAACCCAGACCTCTACGAACGTCAGGTTTGTCTCCTCCTGCTGCAGCTCTGCTCGGGCCTCGAGCACATGAAGCCCTACCATGTGACTCACTGTGATCTGCGGCTGGAGAACCTGCTCCTAGTGCAGTGCCAACCAGGAAACCCCTGGAACTTGGATGTGCTGGAGCCcaataacaacagcagcagtggAGTTGGCATGGTCACTTCTGCTGCCAACTCAGCCTGCCCTGCCCGGCTTATAATCAGCAACTTCTCCCAAGCCAAGCAGAAGAGCCAGCTGGTGGACCCTGAGGTCTTGAAGGATCAGTGCAGGCTGGCTCCAGAGATCATCACGGCAACACAGTACAAGAAGTGTGATGAGTTCCAGACAGGGATTCTCATCTACGAAATGCTTCACCAGCCGAATCCCTTCGAGGAGACCCCCGAGCTGAAGGAGAAAGAGTACACCCGGGCAGACTTGCCTCCGCTACCCTCCCGTTCCTTGTACTCCCAGGGCCTACAGCAGCTGGCCAGCTTACTGCTCAATGCCAACCCCTCTGAGCGCATACAGATCACAGATGCACGGGCCTGCCTGCAGTGTCTGTTGTGGGGTCCGAGAGAGGACCTCTTCCAGTCTCTGAGTGCCAGTCCTGGGCCGGGCCACAGAGAGGCAACCTTACAGAATTGGCTGGACCTCAAACGGACACTGATGATGATAAAGTTTGCAGAGCGTTCACTAGATGCTGGCTGTGGTGTGAGCCTGGAGGACTGGCTGTGTTGTCAGTACCTGGCCTTCGCCACCACAGACTCTCTGAGTCGTGTTGTCAAGATCCTGCAGCAgcaaaagcagcagcaacatcACTGAACTCAGTCACTTGTTCCCTGCCTTCACACTCCTGCTGCCCACCTCACACAATGACCatgcaaatcaaacaaacttctAGACATAGTAGGACATTTTGCAGTGGACCCAAGTGATTTTACTTTTACCAATGGTCTAAGCCaccaaaattattttttccttcataaaAATGGGAAAACTGTCTGGAAAAACATCACCCACCACATTTCTTCATCTCTCTTTCAATGCATAGCTTTTTGGGCTGTATTGAAAAAGTAAGAGTAATTCCCTAGTATTACTTAGTTTCCTTAaccaatgaaaaatacatttgctaaaTGATACTTCACAGAAGTCTCAAACCCAGATCCTAGACAGCGACAGAGTCTCTGGGGTTTCAGTTACTTAACTGGTGTAATTATTTGATTCATTGGACAAATTAATGCTTCTCTCCAGACCTCAAAATGATTATTTAGGTACAGTTAAAATCAAGTGCATTTACTTCTGGAGAtcttgaaaatatattcaatgtcCAATTGAGGAAATAATTAgcccaattaagtaattaagatctTAGTTCAGAACAGAAAGAAGATGACTCTGCAGCTCTCAGGGAACCACATACTTCGATTTaaacttgaaaaagaaaaggggggtTGTACAACACAACTAAAATGTGCAGTCCATTAGCCTGCATGAATACAGCCCTCACTCTATTGCGCTGTTTTTGGTTTACCATTAGTTTTTCTCTTCATTATTTCTCTGGTATTGTGGCATGAACAATCTTGCCTTTTCAGGCCATTGTATTTCACTTTACAAAGCTTAACTAGTTCCAGAATCCTCCATCTATTCAACACctatgtttaaagaaaaaacataatacaagcAAAGCTGTAACTTCATATGAAAGCTTTCATTTAAATGGGGAACTTGGGGAATGGGAAATGGTTATGGCTTAATCCATATTATCATAAATGTCTAAATTGGGAGGGCAGCGCACATAATCTCACTAATAGTTTCCCCATTCTTCCCCAGTGTTCAGTTTGTCCTTGGGCTTGGCATGAGCTGAGCTGTTCTGACCAGAAATGTCCTCTCAAGCAGATTCAAGTAATAGGCTATGCATTTGAAGATTTCTATTCAGAATGTCTAGAgctcaaaacattttctttaaaaaagctGCATAAATCGATATGTtttctgaaaggaaataaatgcacACCGGTGAAGAAATACGATCAGCTGAATGAATGTACAATGGTTCCTGCATGTAATCTGTCTCGGTAGGCTGGACAAATTATTGAAATCTTAAAAAGTATGAATTAGATTCAAGAAGAATTATGCCACAAGCGTGTCAccgtttaattattttaattgagtcTGGTTAAGATGCTGAGACATCAGAAAGGATTTTGACCTGTCTATAGTGAACCATAGTGTTTATTAAGGTTACGTTATGCACATCTTAAACGTACCGATCTGTGGTTCggtattaaaataatcataataacctAATGATGGATGTAGAACTTTTATCATCACTTTGTTTAAAGTAAAGTAATCTTTACTTGCCTGcccataattatatttttaatatatattgttaatatatcAATTTGTTCTTACCAGACCAgcattcatacattttctattaatgCAGGATTAACTTAATTATTTCATCATCCTTGTTTAACTCTTCTCTAGAATAGGAAGAGATTGATAAATAACCAAAGATCACCTTTATTTTCAAGCTGAATTATCACTATAATTactgaaaaatgaaatctgGTTGTTTGACCCTCaaattttttctttctcctgatTTTAAAGTGGCAATCAACAGACATCAGGTAAACAAGAGTTTTAATTAGCATTGAAAAACTGAAGTGCCCTTATTATAATAGTATACACAAACAATAAAGCCACAAGGCAGTAAAGCCTTTCTCAAATACTACGCATCAATCTTTCctctaaattaaatcaagagAATTGCCTTATATGAATTGCTATGACAATGGTTTGCATGCTGTGGGCCTAGATCTCCTTTTAGGTTTGGAAATTTGATTTGGTGGTATCAGATTACCGACAGAGTTTGGAAGTTTTGATTGAAAGCAGGTGTCTATTTTGGGTCAGAACAGCTCCTCCGTCTGATGCTCGTACCAATGAGTGAGTGGGGATGGGGTACAACTCCTCCTAATTTGGATACATGTgcaattattgtaaatgttttaactttGTAAATGACAGTATTGATCTTGTATGTACTTTATATTACTATATGCAACTTtggtgttttcttttcccctccTTCCTTTTGGCACATATTGACATGTAATGCCACGCACATGCCTCTCATTTGAGGAGGATAAGTGGGGCCAGGGTCACTTTCGAGAAAACCGCAGGAAGGTGTCTGTTTAATGCAGCGAGGTGTCAGGATGAATATACACAGATAATGGCCACTTAGGACATGTGTTTCAGGGACTGCCTGGTTTTGATTTCTTCTATCTTTAGGTGGTTTGGACTGAGGAAGTTGGCACAGCTAGTAAAACCACTCCTCAACGGAGTTCGTAACCAAGCCTTTTGGACATAAAGCTTGGAATTTGTTGCTGCtcggcaaaaacaaacaaaaaggtatTTCAGAAACTAGATTTGCCATTTTTCCTTTGTTGGTCAGGATAGAATACATTACAGTTCTATTATGAATATGCAAGATCTTGGGTTAATTGACTTTGTTTGTATTCGAGCATAAGGTACCCAGAAAGCACATAAGCAATTAGCTTTCTGTTAGCCGTTCCATCACTCACCTCATTGATTGTAATGAGATTATTgactattttaaaacacaaatgtgttgtAACCACTAGATCTGATGGCCTTGGGTTACTAGATGTGTACCACTGTCTTGTCACCCCTTACCACTCAGCCGCACCTCCTACAACTAGTGTTACTTACTGCAGCCAGCCACTTAAGGCCACACCAATCCTCCAGACTTGTAGTTCATCCTGTAAGTTTTCTAAACTGCTTTCTTAACTAGAGGCTTCTAGTGCACAAAGGGTGTTTACCCACCCAAGAGCAAATCAATACTCTGTGAATGTCTGCATTTCTCCAAACATTAGGAAGTTATTGTGTCTTATTTGGTAATATTTAACACTTAGTGTTTtggctatattatattttgttttagagaaaaagaaagaaacagaaagtgaGCAGAATGTGCTACAGATTGCCAACCGCTGCAAAATGATGATGCTGGATAGGACACATGCGGTGATAAAAGGCTACTAGTAACAGCCAGGGTTGTCCATGGACTCCTCCTGCATGCAGATCTATCAGACTGAGCTTTTCATCTCAGTGTGTCCTCACAAGGCTGAGCTGCAACTGGCTGGTATGAGATGGACTGAATTTGGTCAGGAATGTGCTCGAAATAAGCAGAacttttgtcaattttaaaatgtaaaatatatgggTTATCATGTGGTGATAGTCTTGAAAACAAGTAGCTACCATTCACACCCAGCCTCACTTAGTTCTCTTGTACTTGATTTAATCTtttctaataatacatttcaaattcaggTCTATGGGTGAGTCTAAAAATGAGGTCCTGGGCTACTGCTGTTACTACTATATCTGAGGAGTCACACATGTGTGGAATGCACTGGGGCTGTCCATTGTTGGAGAGTCAATATTTGAAGGTAtgataatacatatacagtatatatcacTAGTACCAGATGTACAAGACTGCCTAAAAGGCAGGGAAGACCACATTAGTGCCATTTCTAAACAAGCTTtgctgtttgtattttaaagctgtGAGCTAATATGGGAGAGCTCTTAGCCAGAAAAAAAACCTTTGGGATacaaaaatgcatcagattttctttttttctatttcttcttttgAACATGTCACATTTGATGCTTTATATTTGAGCGCTCAGTACATAGACAGTGAGCTTTGTACATGAGCTTTTCAGCACCTTGGGGAGAGAAGTTTTGCACATAAGAAtctgtacagtattttttttcccacctcCATTATAACAGGAAAAAGGTCAACAACTACTGATTAGGAATTTGGCTGGGGAGTCTACTAGTAAAACTAACAGTTCTCCATCTGTTATTCACTAGTTTGTCAATGTGCAATGTGTCAAGGTGCATAACTGTTGTTGACCACGACCCAGAAGGAGCTATAAGACTGAAGTGTGCTTCTTTGGGGTTTACATTATAACAGACCCACAACATGGAGAAGAGCTCTCATAGCTTATGTATATCTTTTGGCGTGTTGCCACTAATTGTTGGTCAAGTTAACCAATGttaatgaaacaataaatatatgtttttataaaaaataaaaatactgactATCtcttgcatttttcatttataaaataaaacaagataac

Function

GO: NA

KEGG:

id description
K17538 PEAK1, SGK269; pseudopodium-enriched atypical kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32027 lncRNA downstream 65804 26053764 ~ 26070848 (-) False AMCG00007687
TU32026 lncRNA downstream 67335 26053764 ~ 26069317 (-) True AMCG00007687
TU31916 lncRNA downstream 684630 25451763 ~ 25452022 (-) True G25446
TU31882 lncRNA downstream 880291 25252716 ~ 25256361 (-) True G25421
TU31876 lncRNA downstream 889273 25207774 ~ 25247379 (-) True G25415
TU32121 lncRNA upstream 837792 26999306 ~ 26999546 (-) True G25615
TU32123 lncRNA upstream 867457 27028971 ~ 27029294 (-) True G25617
TU32126 lncRNA upstream 908372 27069886 ~ 27070099 (-) True G25620
TU32167 lncRNA upstream 1092715 27254229 ~ 27257033 (-) True G25655
TU32217 lncRNA upstream 1192454 27353968 ~ 27355254 (-) True G25697
AMCG00007687 mRNA downstream 69117 26060929 ~ 26067535 (-) False AMCG00007687
AMCG00007688 mRNA downstream 241051 25863022 ~ 25895601 (-) True AMCG00007688
AMCG00007689 mRNA downstream 454795 25672605 ~ 25681857 (-) True AMCG00007689
AMCG00007683 mRNA downstream 477933 25653720 ~ 25658719 (-) True AMCG00007683
AMCG00007684 mRNA downstream 505162 25630792 ~ 25631490 (-) False AMCG00007684
AMCG00007694 mRNA upstream 101474 26262988 ~ 26272450 (-) True AMCG00007694
AMCG00007695 mRNA upstream 317517 26479031 ~ 26480878 (-) True AMCG00007695
AMCG00007699 mRNA upstream 1038129 27199643 ~ 27212764 (-) True AMCG00007699
AMCG00007706 mRNA upstream 1131913 27293427 ~ 27307131 (-) True AMCG00007706
AMCG00007705 mRNA upstream 1163187 27324701 ~ 27334387 (-) True AMCG00007705
TU31949 other downstream 505060 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 871701 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 1868731 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 2163987 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 5663948 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 8707921 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 11078575 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 11333397 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 11406103 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 11409443 37570957 ~ 37571488 (-) True G27439

Expression Profile