RNA id: AMCG00007694


Basic Information

Item Value
RNA id AMCG00007694
length 1624
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00007694
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 26262988 ~ 26272450 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTACTTGGCTGTAGGTTTGCCAGCATTGAGAAGAAAACTCCAGAGGCCATGGAGGATTTCTCCCAGGCCCCAGTACAGCAGACTGAGTCTCCCAGTGGCAACACTGAGATAAGCAATCAGAGGAATGGAGAAGAGCAGAAGCCTCGGAGGTCAAGCTGGACCAAAGGGCGAAAGAGGAAGAAGCCCATCAAGGACAGAAACGCTCCCAAGGCACCACTGACCGGCTATGTGCGCTTCATGAACGAGCGTCGGGAGCAGCTACGTGCAGAACGTCCCGATGTGCCCTTCCCAGAGATCACGAGGATGCTGGGTAATGAGTGGAGTAAACTGCCTCCTGAGGAGAAACAGCACTATCTAGATGAAGCCGAGCGGGATAAGGAGCGGTATATGAGGGAGCTGGAGCAGTACCAGAAGACAGAGGCCTATAAGCACTTCAACAGGAAAGTGCAGGAGAAACAGAAGGGCAAGCAGCACAGAGCAGATGTTGGACGTCAGGGAGCCAACGAGTCTCTCCATGAGAAAGACACTGAAGCGAAGGAGAGGTCTGTGTTTGACATTCCCATCTTTACAGAAGAGTTCCTCAACCACAGCAAAGCACGAGAGGCTGAGCTTCGGCAGCTGCGGAAGACCAACATGGAGTACGAGGAGCGCAATGCAGCGCTGCAGAAGCATGTGGAGAGCATGCGCGGGGCCGTGGACCGGCTAGAGGGCGACGTCATGCAGGAGCGCAGCCGGAACAGCATGTTGCAGCAGCACCTGGAGACCCTGCGCCAGGCCCTCACCTCCAGCTTCTCCAGCCTGCCCCTTCCTGGCAGTGGGGAGACACCCACCCTGGACACCATTGACACGTACATGAACAAGCTGCACAGCATCATCCTAGCCCACCCCCAGGAGCACGAGACCCTCATCAGCACCGTGAGAGAGGTGGTCAGCCGCCTCGACAGGTAGAACCAGGTGAATTCCACAGCTTCTGCCGTGTTCCTGAAGGGGAAGAGAGCTGAGGATAGCGAGCATCTAGGCCCCATATCTCACAACATGCAAAGCAACATTAGGGTTCCTGTCCACCCTGTTAACATTTCAGCTACTTAAAGCCTGTTTTGatataattttcatttattaatgagcTTTGAGTGTTTCTAGTGAGGTCAAGCAACCTTGTGTTTTTAAGACGTCTTTTATTCTTCAGTCTACGTGTCAGATGAAACTCCTTTGAGGtttagaatatttattttgtacattatattatttttttacttccttttaATTGTAGTGTTCAGCCTGATAATTTTACGCtcttaagaaacataaaaactgaGGTCTGACAGGCTGTCTTCAAATTCCATATATCTCCAGCCTTATCCAGATTAATAACTGTGATTTTGAGCACACAACCAAAATTCTACGTCAGTGTAATATTCCCACAGTGGAGTATCATTTGCCCATCCTGTAAAATGCTGTTGTTAAATTTAATCTCGGGATGAAGCTCTGTCAACTGTTTGATGTTGGATTTGAAACTTCAAAATACCTTAATGAATTTTAGgacttttttattgttgttttttatggagGTTGTCAAACTTCAGCTAGGCCATTTTGTTGATATGAAGAGCTGTGTCtgact

Function

GO: NA

KEGG:

id description
K24660 HMG20A; high mobility group protein 20A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32027 lncRNA downstream 192140 26053764 ~ 26070848 (-) False AMCG00007687
TU32026 lncRNA downstream 193671 26053764 ~ 26069317 (-) True AMCG00007687
TU31916 lncRNA downstream 810966 25451763 ~ 25452022 (-) True G25446
TU31882 lncRNA downstream 1006627 25252716 ~ 25256361 (-) True G25421
TU31876 lncRNA downstream 1015609 25207774 ~ 25247379 (-) True G25415
TU32121 lncRNA upstream 726856 26999306 ~ 26999546 (-) True G25615
TU32123 lncRNA upstream 756521 27028971 ~ 27029294 (-) True G25617
TU32126 lncRNA upstream 797436 27069886 ~ 27070099 (-) True G25620
TU32167 lncRNA upstream 981779 27254229 ~ 27257033 (-) True G25655
TU32217 lncRNA upstream 1081518 27353968 ~ 27355254 (-) True G25697
AMCG00007693 mRNA downstream 101474 26136652 ~ 26161514 (-) True AMCG00007693
AMCG00007687 mRNA downstream 195453 26060929 ~ 26067535 (-) False AMCG00007687
AMCG00007688 mRNA downstream 367387 25863022 ~ 25895601 (-) True AMCG00007688
AMCG00007689 mRNA downstream 581131 25672605 ~ 25681857 (-) True AMCG00007689
AMCG00007683 mRNA downstream 604269 25653720 ~ 25658719 (-) True AMCG00007683
AMCG00007695 mRNA upstream 206581 26479031 ~ 26480878 (-) True AMCG00007695
AMCG00007699 mRNA upstream 927193 27199643 ~ 27212764 (-) True AMCG00007699
AMCG00007706 mRNA upstream 1020977 27293427 ~ 27307131 (-) True AMCG00007706
AMCG00007705 mRNA upstream 1052251 27324701 ~ 27334387 (-) True AMCG00007705
AMCG00007704 mRNA upstream 1085285 27357735 ~ 27370382 (-) True AMCG00007704
TU31949 other downstream 631396 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 998037 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 1995067 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 2290323 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 5790284 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 8596985 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 10967639 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 11222461 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 11295167 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 11298507 37570957 ~ 37571488 (-) True G27439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047443 False 1478 mRNA 0.51 9 NC_007136.7 7321675 ~ 7336346 (+)