RNA id: AMCG00007697


Basic Information

Item Value
RNA id AMCG00007697
length 4390
RNA type mRNA
GC content 0.44
exon number 13
gene id AMCG00007697
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27235994 ~ 27253888 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctctctctctctctctctctctctctctctctctctcgcttttttATGAATGAAGGAGGGAGCTCATGGCCGTTTATGTATCATTGTAACCAGCAGGGGGACAGTCAGTGTTGCTGGTCTGTGAGCGAGGGCTCTGCTTTTGAAGAAATAAGCAACAGAGGATTAAAGATTGCAGGGCAGCAACACAGGGATGCCTCTAAATCATTGTTTTAAGAGCACAGTGATGAAGATCAGCGCAGGAAGATGGATCTTTTAGCCATTTTACCCGCAGTCCGCCATCAGGAAGGATGAtgcctgtgtctctctctctctgcgagGCTGGAACCGAGTCTGTCTGAAAACACAAGCCGTTTCCAATCACCGaaacaaggaaagaaagaaagaaacaaagtacTCGTATACAGTTGCAGGGACTATTGGCgtctatttacatttgaaaagaaaactttATTTGTACCAATCCTTATACTggacattcatatttttataatggAGTATATATTTTAGTGTGTTGTAGGATCTTTCtctactttgttgtttttgcacatttaaGCGACTacgttgtttttgtattaagtgTGGAACTACTTTTTTATGACTTAAAATAAACCCTGAAGTGATTCCTTCAAAACCACGAAGATATTGTAACAACGAAACGGCAATGGCAGCTAACTTAACAGCAGAGGAGGAGCAGGCTACCAAGCAGTTTTTGGAGGAGATAAACAAATGGACAACCCAGCACGGAGTGTCTCCCCTGTCCTGGAATGTGGCTGTCAAGTTCCTCATGGCTCGAAAGTTTGACGTCCTTCGAGCCGTCGAACTGTTCCACAGCTACAGGgAGACACGTGTAAAGGAGGGGATAGTGAAGCTCAAACCCCTGGAAGAGCCGCTGAAGTCGGAATTGCTGAGTGGGAAATTCACAGTCTTGCTGCACCACCCCAACAAGACTGGGCACCATGTAGTGCTGCAGGCGTTGTTCTACCTGCTGGACCGTGCTGTGGAGAGCTTTGAGACCCAGAGGAATGGCCTGGTGTTTATCTATGACATGGCTGGCTCTAACTACACCAACTTCGAGCTGGACCTCAGCAAAAAGATCCTCAACCTGCTAAAGGGTGCTTTTCCAGCACGGCTGAAGAAGGTGTTCATTGTGGGAGCTCCAGTGTGGTTTCGCGTGCCCTACAACCTGCTAAGCCTGCTGCTGAAAGAGAAACTCAGAGAGAGGGTGCAGATGGTGAAGATGGCAGATCTGCGGCAACACCTCCCCCGGGACTGTCTCCCAGAGCATCTGGGGGGGCTGCTGGCCCTGGACCCCCGTGGCTGGAACCGGCAGCTGCTTACTGTGCAGAACGGCTGTGTCGACCCCGTGGATGAACTGGTGGCTGTACCTTTGGGACCAGGCCGGGAAGAGGCCTCCATCCACACTCCGGGGCTGGAGGCCATGACCCTGCAGGAGCTGGTGGAGCATCTGGCCCTGGTACAACGAGCCGGCATCTACGAGGAATATGATGAGATCCGCAGAGAAGCCCCGCCAGGCACCTTCAACTGCGCCCTAGCTGCGTGTAACCAGGACAAGAATCGATATGGTGATGTCCTTTGTCTGGACCAGACCCGCGTTCGTCTGAAGACTCGAAGAAATGAGAAATCAGACTATATAAATGCCAGCTATATGGATGGTTACAAACAGAAGAATGCCTACATTGGCACTCAAGGGCCCATGCAGAACACCTACAAAGATATCTGGAGGATGATGTGGGAGCAGAATGTCTTAGTCATTGTCATGACCACTAGAACGGATGAAGGGGGCAGAAAGAAATGTGGTCAGTACTGGCCTTTGGAGAGAGGTGAGCAGGAGATGTACGGCCACATCGCCGTGGTCAACCTGAAAGTGGACAACCACTCCCATTACAACCAGACCACCCTGGAAATGCACAATACTGAGACCAATGAACAGCGGCAAGTGACTCATTTCCAGTATCTGAGCTGGCCAGACTATGGAGTACCGAGCTCTGCCATTACGCTGATTGACTTTCTGGGAGTGGTCAAGCGACAGCAGCGCCAAGCTGTCAAGGCCTTTGGTCCTCGTTGGAAGGGCCACCAAGGAGGACCACCAATGGTCGTCCACTGTAGTGCTGGTATCGGCAGAACAGGTACTCTCTGTGCCCTGgacatctgtctgtctcagcTGCAGGATGTTGGCACTCTGAACATCTACCAGACTGTGCGCAGAATGAGAACACAGCGGGCCTTCAGCATTCAAACTCCTGACCAGTACTACTTCTGCTACACTGCTATCCTGGAGCATGCTCAGAGGCTGGGGATCCTCACAGCCAATCAGTAAGGCCTCCCCAGCCACTGTTCCTCAATCCTCAGACCAATAACAGGCCACAGAAGCTGCCTGGACTGACCAAATTGCTCCTTTTTCTGGCACAGCCACCAATTGCAAACAGTCAATGCAAACCAATCTGAATAAACAATATGTGTAAGACACCACCAGACATTAACACAAGTCTAGGCTGGCAATGTCCTTGGCTTAAAGAATCGAACCTTGTCTTGCCATGGATTTCTTTTCCATAGCAGGGAATGGAGTCTTCAAACAATTCAACATACATACTTTGTTCAAGCTAGTCTCTGTTCATTTTCATACCACTGTGAATAATGTATGTGGTGAAGCTAATGGAAAAATATAGTATTACCATGTTATAGAGTGTTGTGAACTGGTGGAAGTTacaactgaatacatttaagcCAGGGCTTCTAATTAAGCAGCAACCAAAGGAGCCTTTATCTTCCATAAAAAGTCACTAATTGTGGTCCTTCATTAAAGATGCTTCTGCTTTTTCTAATTGTAATTGCAGTTTCACAGACttagactgtgtgtgtgtacctcaAGCTTGATGCAAAAGTGTCGATGTAGGTAGATGCTTTTCTAATATTTTGATGCATATTCCACGAGCCATAACAAAACTGTTCTAGGACTAAATTACTTCTTTAAAGTTATGTTGGTGACATTTAACggtcattttcttttgtaatagTACAAACAAGTCTGCTATGTTGTCAAGTCAGCCTTACAAACTTGAGGTGAACATAAGAGGCCTGATGACCTGTTTCCAACCACAATGAGGCATCGAGGCCAGGTGATCGTAGTAGGAACAAGTTGACATGCAATTGGAGAATTTTAAGGTTCAGGATTACTAGTTATAATTTAAGGTTTTGCCACAGACTTGAGTTACGGTTGCATAAGTTCTCTGAAAAGCTACTCAAGGCGATTTAGTTTTTAGTCAGCACTGACAGTGGATAATTGAGTTAACAACCAAACTTGATTTGTATAGGATGAGCATGTCTGAAAATTAATAGTAATGCATTTAGTACAAGACCAGTTCCAACTAGATTATACATAAATCCACAGTGGCTGTCAGaatccagtttgtttttattctggcATTGAGTGGAATTGTGCCCCAGACACACAAGGTATCTTGACATAGTAGCTATATGTTGTCCCATATGCTGTTAGGAGACCCTATATTGCAAgaatagtattttattattttgaccaAGACTGGACCACGTTTAGTTATTCTTCCAGTTATCcctaatttaaacaaacacctATATGCACTCCTCTGTCCCAATATGCTGAGCCTTTGGTGGAACCTGCTTGTCATTCACTCCCATTTTAGTTCATTTCTCTTTGCATTCTGGCACTCTAGATGTGGGCATCCATTCTGTACTATTGTAGAACTACTTAATAGTTGAACTAATTATTCAAAAAGTTAAGGAGATATTTGCAAGAGATTCCTCCATAGAAATGGATAGTAAGGGCCTACTACTGAGTTGCTCTTGAATTACACAGCACCTTACATTCCAGACCGTAAAGTCCCAGGTCAAGGTGTGCAATATAATTTCTAGAAAGGCTTTTTGGGCACTTTCACACAGGCATTCctaatgtgctttttaaaactatatttctgTTCTTAAGTATCGGTAAAACAACCATATAAATTACTAATGTAATGACTTTAGTCTTATAGAAGTAAggattttgtgttgtgttgtgttgctttggCCTCTTCCCAAGACTGGCATGGAGAGGTGGGCAGGGGTACAGGGGCTGAGTTTGGGTcctctgtgtctttgtctgACCAACTGTGCTGTGTACAGCCTTAATTAGCCATTTGTACAAACATTGCTTCCATTGCTTTGCAGGCATCATTTGTAAAATTATCAATCTAATTAAATGTCATAGGAGCTAAACATGTGCTTTACTATTAAATTCATATTGAATTTGCTTGTAGTAAGAATCTCAAGACACATTCCACATGTCCTCgctattatatatacatatatgtgtgtgtatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18038 PTPN9, MEG2; tyrosine-protein phosphatase non-receptor type 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32138 lncRNA upstream 44615 27191169 ~ 27191379 (+) True G25631
TU32092 lncRNA upstream 922429 26313363 ~ 26313565 (+) True G25588
TU32065 lncRNA upstream 965274 26262827 ~ 26270720 (+) True G25574
TU32052 lncRNA upstream 1093706 26136767 ~ 26142288 (+) True G25562
TU32051 lncRNA upstream 1101417 26134361 ~ 26134577 (+) True G25561
TU32154 lncRNA downstream 213 27254101 ~ 27256998 (+) True G25645
TU32155 lncRNA downstream 330 27254218 ~ 27256998 (+) False G25645
TU32170 lncRNA downstream 26769 27280657 ~ 27282110 (+) True G25658
TU32191 lncRNA downstream 49960 27303848 ~ 27307066 (+) True G25674
TU32194 lncRNA downstream 75059 27328947 ~ 27330202 (+) True G25677
AMCG00007698 mRNA upstream 9217 27214770 ~ 27226777 (+) True AMCG00007698
AMCG00007696 mRNA upstream 56622 27159491 ~ 27179372 (+) True AMCG00007696
AMCG00007692 mRNA upstream 1104984 26118096 ~ 26131010 (+) True AMCG00007692
AMCG00007690 mRNA upstream 1120386 26096726 ~ 26115608 (+) True AMCG00007690
AMCG00007691 mRNA upstream 1152573 26070759 ~ 26083421 (+) True AMCG00007691
AMCG00007700 mRNA downstream 8617 27262505 ~ 27280545 (+) True AMCG00007700
AMCG00007701 mRNA downstream 63651 27317539 ~ 27324818 (+) True AMCG00007701
AMCG00007702 mRNA downstream 81037 27334925 ~ 27348351 (+) True AMCG00007702
AMCG00007703 mRNA downstream 97335 27351223 ~ 27355475 (+) True AMCG00007703
AMCG00007707 mRNA downstream 176014 27429902 ~ 27448438 (+) True AMCG00007707
TU31514 other upstream 3041513 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 4042473 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 4953036 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 6169211 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 8179861 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 829934 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 1199121 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 1749207 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 2511940 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 8357228 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile