RNA id: AMCG00007698


Basic Information

Item Value
RNA id AMCG00007698
length 2962
RNA type mRNA
GC content 0.42
exon number 9
gene id AMCG00007698
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27214770 ~ 27226777 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCGGTGTAAAAAGAAGATGGGTGCCATTCTAGTTCACCTACTTTAGCATATTACTTACACTGTCGTATTTTATAAAGTTTGCTAAGTAACATAACATGCAATGATAAAGGACCAAAAGGGAACCTATCACCTagcaatgtgttgttttttaatccagACAACAGATTTtgagaaaagtgtttttatttctggttttgctttgtttggttCCTTCCCCGCTTTAACCCAGGGAAATCACTTGGTCGTCCATCAGCAGACTCGTGTCCCCGTGTTTCTGGAACTCCGTGAAAACTTGTTCGTTCGAGGGGGTTGAGCATTTGCCGCAGAGTTTTCGTAAATAGgtaaTTATGGACGACCTAACCAAGGCACTAAGTGGGAGCTTCTCAGTCTCCCAGGACCCCAACAGTACAGCAGCTCCCCACCCAAGACTGTCGCAGTACAAGAGCAAGTACAGTGTGCTGGAGCAGAGCGAGAGACGGCGCAGGTTCCTGGAGCTGCAGAAAACGAAAAGGTTGAATTATGTGAACCATGCTCGTCGGCTGGCAGATGATGACTGGACAGGAGAAGATAGTGAAGAAGAACAGGGGgatgagaaggaggaggaggaagcagTGGAAGGGATGGAGGTTGAAGAGAGGAAAAAGTTGCCAAAGTACTATGCAAATCAGCTGATGCTGTCGGAATGGTTAGTAGACATCCCTACAGACCTAGCCAGTGAGTGGCTAATGGTCGTCTGTCCTGTGGGGAAGAGATCTCTTATTGTCGCCTCCAAGGGGTCAACTGCAGCTTACACGAAGAGTGGGTACTGTGTGAATCGATTCCCATCCCTGTTACCAGGAGGAAACAGGCACAACTCAGCCATGGGGAAAGATTACACTATCCTTGACTGCATCTTCAGTGAAGTGGACAGGACATACTACATTTTGGATGTCATGTGCTGGAGAGGCCACCCTACAGAATTCCGCTTCTACTGGCTGCAGTCGAAAGTCCAGGAGGTAGAGAATCTGTCAGAGATCGCCAAGCGTAATCCGTTCCGATTTGTCAGCCTGCAATGTGTCCCGTGCACGGTGGAGTCGATCCAACAAGCACTAGCCATGGAGTACAGCTTCAAAGTGGACGGACTCCTATTCTACCACAGAGAGACCCACTACACCCCAGGAAGCACCCCTCTAGTGGGCTGGCTCAGGCCCTACATGGCATCTGAGATCCTGGGTATAGAGGTGCCCGAGGGACCTCTCACCGCTAAGCCTGAATATGCCAGGCACCAGATGCAGCAGATTCTGGAACACAAGAAGGGACCTCGCTCCACGGAGGTACGGCCAGCAGCTGAAAACGGGCGCTATGAGTTGGAGCACCTTTCCACGCCAGAGGAACAGACTGAGGAGAAGCCCAAAGTTATGGTGGATCCTGGGAGCAAAATGGAAAACTGAGCAGCACCCTACCCTTTGCTCACTCTTTCTACCTGAGGTGGACTCTCACAGCAGCTACCATTTGATTTGCAACACCACCAATCATAGCGTCAGTCTTTGAAGTAGTCTGATGCTCGGATGACAGGATTATTGGTTCTCTGAAGCATTCCCTGTGCATTCTACATACGTTCTGAGCTCagatcatataaataaatatatatataacaaactgAAGAAGGTTTAATGATCACCGAGCTCTTAAAACTGGCTGTTAAAATCTGTATGATTAATACTAAGGATAAAGGGGGCCGTTTTTTTAAGGTCGACCTTAAATGACACTCTAAAACAACTGTGACATCCAGTTCACAAACTGTCACAGTCTCAGTGTACTGTGTAATGTATCTTCGGGAGGCAGAGTCATCTGGAATATTATACTTATTAGCAGTGAGTGAAGACTTGTttgttcctttttgtttttgagtgaaATATCGGATCAGCATTTACTATTCACTGTTTCATAATCATACAGTGAGCAAAGCGCAGCACCTCACTAAACAAGGAGGGGCTTTGTATggtagtatatatttttgtaaaagtcTTCAGTTGTTGGCATTCCCCAACATGTTGTTTTCAGATGAGAACAAAGGTTAGAGGCTTGtaagtgtttgtatttttatgttggCTTAAAgccattaataaatcatttttccACTTAGAATCAAAGAGGAACTGTGGATGACAGATCTGCAGCAGGAAGGAAGAGCAGTGTCTTCAACAATGgaattatttttcagattttagtttttcgtTTTTTGATGGCATTATGCAAGACCTTCACTTGACTTCATAGTAGGTAAATGCAATTTCGAAAACTACAGCAAAACAAAGGCTAGGTACTAGTGGAGTTAATCTACCAATGCACATTTACATATGCTTGCAGTTTTCAAATGTGATTTAGGTTCAGCCAAAGATAGAAATGTGGTATATTCTACCAGTCCATTGAAACATACAACAGACCTCCATCTTGCACAAAACACAGatcaatgtattaaatataaatattaaacaactTTTCCTAATTCcttccattattttttatttataagtatcTTAGAGTGTAATCCAAATAATGTAGATACGTATGGTGAGTTCTAAGCTATTTTCTAACAGGATATATCATTATTTTGCTGCTGCATTATAGCTTCTTGgataatatgcatatttagGCAGTGTATCATCCTAAAGTAAAGTTCCTTGTCCATTCTAAATCATCAATTCATTTAATGACATGGCAACAGTTAAACACAAGAATTCTATCCTTGGCAACAAGAAGAAACTTAGTAAGGTATTTTGCTGCTTTAGAGATGAACCTTTACCCACAAGAGATTGTGAGGAAAATTGACtcataaatgcaatataaaaataaacatttttaaagcgtgttataaaaaatattttaattttaacaatccGTGTAGGAGATTCATGTTTACCAGGAGTTGAGTTCTTCATGAAGTCAGTCACACAATGGCACTATGAGTAAGTGAGGTG

Function

GO: NA

KEGG:

id description
K13151 SNUPN, RNUT1; snurportin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32138 lncRNA upstream 23391 27191169 ~ 27191379 (+) True G25631
TU32092 lncRNA upstream 901205 26313363 ~ 26313565 (+) True G25588
TU32065 lncRNA upstream 944050 26262827 ~ 26270720 (+) True G25574
TU32052 lncRNA upstream 1072482 26136767 ~ 26142288 (+) True G25562
TU32051 lncRNA upstream 1080193 26134361 ~ 26134577 (+) True G25561
TU32154 lncRNA downstream 27324 27254101 ~ 27256998 (+) True G25645
TU32155 lncRNA downstream 27441 27254218 ~ 27256998 (+) False G25645
TU32170 lncRNA downstream 53880 27280657 ~ 27282110 (+) True G25658
TU32191 lncRNA downstream 77071 27303848 ~ 27307066 (+) True G25674
TU32194 lncRNA downstream 102170 27328947 ~ 27330202 (+) True G25677
AMCG00007696 mRNA upstream 35398 27159491 ~ 27179372 (+) True AMCG00007696
AMCG00007692 mRNA upstream 1083760 26118096 ~ 26131010 (+) True AMCG00007692
AMCG00007690 mRNA upstream 1099162 26096726 ~ 26115608 (+) True AMCG00007690
AMCG00007691 mRNA upstream 1131349 26070759 ~ 26083421 (+) True AMCG00007691
AMCG00007686 mRNA upstream 1178406 26019814 ~ 26036364 (+) True AMCG00007686
AMCG00007697 mRNA downstream 9217 27235994 ~ 27253888 (+) True AMCG00007697
AMCG00007700 mRNA downstream 35728 27262505 ~ 27280545 (+) True AMCG00007700
AMCG00007701 mRNA downstream 90762 27317539 ~ 27324818 (+) True AMCG00007701
AMCG00007702 mRNA downstream 108148 27334925 ~ 27348351 (+) True AMCG00007702
AMCG00007703 mRNA downstream 124446 27351223 ~ 27355475 (+) True AMCG00007703
TU31514 other upstream 3020289 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 4021249 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 4931812 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 6147987 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 8158637 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 857045 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 1226232 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 1776318 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 2539051 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 8384339 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile