RNA id: AMCG00007701


Basic Information

Item Value
RNA id AMCG00007701
length 1573
RNA type mRNA
GC content 0.40
exon number 10
gene id AMCG00007701
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27317539 ~ 27324818 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAATATTGAATTatcaaaaatgctttatttattttttcaggctAGACCAAAGTTTGGTATACgttacaaaaagcaaaacatgaccACACAAtacagtatacttTTCAAGCAAGAACATGCTCATGATGACGCTATCTGGACTGCTGCCTGGGGACGGAGTGAGAAGGACGGGTCAGAAACCATCGTGACGGGGTCTCTAGACGACTTGGTGAAAGTCTGGAAATGGTGTGATGAGAAGCTGGAGTTGCAGTGGACGCTAGAAGGTCATCAGCTGGGTGTGGTGTCCGTGGATATCAGTCACAATGGAGCCATCGCAGCCTCCAGCTCCTTGGATTCCCACATACGGCTCTGGGATCTTGAATCTGGCAAGCAGATCAAGGCGATGGATGCAGGACCAGTTGACGCTTGGACTGTGGCGTTTTCGCCAGACTCCAAATACATAGCCACGGGAAGTCACCTGGGGAAGagcCCAGATGGAAAATATTTGGCGAGTGGGGCTATAGAtggaattattaatatttttgatatTGCAACTGGAAAACTTCTCCACACCTTGGAAGgtCACGCTATGCCTATTAGATCCCTTACATTCTCGCCAGATTCTCAACTTTTAGTAACGGCCTCAGATGATGGGTATATCAAGATTTATGATGTacaACATGCTAACCTAGCAGGGACTCTGAGTGGCCATGGATCTTGGGTATTAAATGTTGCCTTTTGTCCAGATGACAGCCACTTTGTTTCAAGTTCTTCTGACAAGAGTGTGAAGGTCTGGGATGTCGCCTCAAGAGCCTGTGTTAATACTTTCTTTGACCATCAGGACCAGGTCTGGAGCGTTAAGTACAATGGAAATGGTTCCAAGGTAGTTTCTGCAGGAGATGACCGCGCAATTCATATTTATGACTGTCCAGTTTGAAAAGGGGTTATTGGACTGACAAAAACATCTGGCAGTTACAGCCCCCTGCAAACTCTGTACTTGTTGTCTGTATTGGTATGATAACTAGACTATGATCTATTGGAAGCAACTCAATGAAGCCAAAACCGAAGACAGCAATTGATGCATTGGTGGtggtatgacattttttttattttagtttttttgtaattagCATTCATTTTGACTACCTGGAACTGCTTTTGTCTTGCATTTAATGAAGCAATCGCAAAACATCCATTCCTGTTCATGATCAAGAGGTTACGcaaataaatccattatttttattctttgatGTTGACctaatttattcatattttgtatgtatctgaaacatgcatttaattaaattacatatttcctTTGTATAAAGGAACCTTATCAGTTTGGGTTcatgaattacatatttaaaataatatataaatagtgtCCCTTGGCACTGGAAAATATAAGGAATAGGATCCTTCAacataaatgcacacaaaataaaattatatctTAAATGTCCAGTGGCAGTTGAGTGATCTTGAGTCAGTCCTGTTTCACTGTTCAATTAGGACTACTGCATTATCCTCTCTTCTTATCAGTGTTTGAAGTGCAATTTCTCATTCTTCTCTGTAAATATGTTTCGTTATTTC

Function

GO:

id name namespace
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0035327 transcriptionally active chromatin cellular_component
GO:0055087 Ski complex cellular_component
GO:0016593 Cdc73/Paf1 complex cellular_component

KEGG:

id description
K12602 WDR61, REC14, SKI8; WD repeat-containing protein 61

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32191 lncRNA upstream 10473 27303848 ~ 27307066 (+) True G25674
TU32170 lncRNA upstream 35429 27280657 ~ 27282110 (+) True G25658
TU32154 lncRNA upstream 60541 27254101 ~ 27256998 (+) True G25645
TU32155 lncRNA upstream 60541 27254218 ~ 27256998 (+) False G25645
TU32138 lncRNA upstream 126160 27191169 ~ 27191379 (+) True G25631
TU32194 lncRNA downstream 4129 27328947 ~ 27330202 (+) True G25677
TU32219 lncRNA downstream 31056 27355874 ~ 27356077 (+) True G25699
TU32235 lncRNA downstream 241877 27566695 ~ 27569353 (+) True G25709
TU32236 lncRNA downstream 241877 27566695 ~ 27569297 (+) False G25709
TU32289 lncRNA downstream 245725 27570543 ~ 27571491 (+) True G25753
AMCG00007700 mRNA upstream 36994 27262505 ~ 27280545 (+) True AMCG00007700
AMCG00007697 mRNA upstream 63651 27235994 ~ 27253888 (+) True AMCG00007697
AMCG00007698 mRNA upstream 90762 27214770 ~ 27226777 (+) True AMCG00007698
AMCG00007696 mRNA upstream 138167 27159491 ~ 27179372 (+) True AMCG00007696
AMCG00007692 mRNA upstream 1186529 26118096 ~ 26131010 (+) True AMCG00007692
AMCG00007702 mRNA downstream 10107 27334925 ~ 27348351 (+) True AMCG00007702
AMCG00007703 mRNA downstream 26405 27351223 ~ 27355475 (+) True AMCG00007703
AMCG00007707 mRNA downstream 105084 27429902 ~ 27448438 (+) True AMCG00007707
AMCG00007708 mRNA downstream 153193 27478011 ~ 27504969 (+) True AMCG00007708
AMCG00007709 mRNA downstream 180848 27505666 ~ 27516702 (+) True AMCG00007709
TU31514 other upstream 3123058 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 4124018 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 5034581 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 6250756 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 8261406 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 759004 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 1128191 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 1678277 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 2441010 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 8286298 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile