RNA id: TU32249


Basic Information

Item Value
RNA id TU32249
length 2820
lncRNA type sense_over
GC content 0.40
exon number 6
gene id AMCG00007704
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27357731 ~ 27370519 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGGctatcttctctctctcacacacacacacacgtatatatatatatatatatatatatatatatacacacacacacacacacacactctctctctctctctctctctcacacacacactagactTCATGACACCCAGACGCGATTGCCTGTTTTCTTTACCCATGATCCCCTAGCTCTTGGTGTTTAAATAACCTGAAGCAATCATTTAGCCACATTGTAACTGAGCATTGTAACTGACAGTTAAAGTGTTTACAAAATATCCTGGTCCGGAGAGAAGAGACAAAGGCAAACTGGGGATGTTTCAGTGATCCTGACGGTTTTTTTACGGATGGTGAACCGCTCCGTGGAGCTTCTATTAAATAGTCACTGCTTTGGTTGTCAGAAAGGATACAATATACATCTCGATTCCTCCGAAGTGATCATGCTAAATAGTGAAGAAAGTACCTCGTTAATGGGCTCCAAGCTCCACTGCACCAGGCACCAGGCTCCAGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACTAGTGAAGATCCCGGGTGGGCGAGGGACTGGCAGGGATCACTCTCTCACTGTGCTCCTACACAAGGATGACAGACTCACAGTAACGCAGGCTGCTCCAGTTAATGGGACGCCACCAGTTCTGTACTTCCAGTACCAGCTGAGCGAGACCCGGGTGTCCTACTGGGAGGCTGTGCTGTCTGGAGGCAGCCTCTTCCTGGAGATTGCAGAGGGGGCATTACCAGAAGGAAGCAAGGAGGGACTGACTGTTCTACTGGAGTTTGCAGAAGAGAAGTTGAAagtcaattatgtttttctgtggttttaCAAAAGCAGAGACGATCGATTGTCTATCACAAAGACTTTCCATTACCTGGGCTTTGAGATTGTGAAACCAGGCCACCCCTCAGTGCCCACCCGGCCAGACATCCTGTTCATGGTCTACTCTCTGGATCAGAGCACTTCAGATGAAGAATGAAGGAATCCACCAGTGCATTGTTCTCCTGCCACCTGGGTCATTGGAACAACCTGTCTCACTGTCCTCTTTACTCGGATATCCAGGCACTGTGCAAATGTAGGCAGCTAAAGGCAAATCTTAGGTGTGAGACATCGTATACTCTTTAACAATATAGCCATGCTAACACGCACAAGGGGGTGATTCGGACCGGATGGCAATCTCATTTATCTTTATTTCCCCTCTGCCCACCTCGGATCTTTTAAATAAGCAGGGTTCTGGCAGACAGAACAGGACACTCTAACTGGGTCATTTGGTGCTAAAAATACTATGTAACCTCCAATACCTTGTGTTGAATGTCAGGGTTCTGggattatatatacagtgggaaGAGAGATGCAGTAATGAGAATCttttatcacatttgtttttagtaaGGGTTaggacattacatttttctcccATTACTGTAGCACTCTTTTTAAGgttctttatttacatttttatatatagttcaaccatattctttttttttttactgaattgtATATCGCATTTTCTAACTACACATGAACATGGACTTTGCACTGGAGATTTGCCTTTATTTGCCAAATCATAAAACAAGGAATTCTGCTGGGATTAGCTAGATTTACTGCAGGGTAAAAAACTAGGAGTTCTGCAGGCTAAATCAGAAGTGAGATGTACGGCTGGGCACTTCTAATCCATTTTCTCCCTGAGCTTAACTCCCACTTCGTCACTAATTACTGCTTTATTGTCTTAATTAGGTTTGATTAATTCGTCAAGGGCATGGAAAGAATTAAGCCCTGtgatgtaatataaataaactagcCAAGACTGTGCAACCTTGAACCCAAATGGTATGTACAATTACGTTCAAATTAACATCCGATTTCAGACAAGTTGCCCAAATATGTACtaggacaaacaaacaagctaAGAACCAAAAGCATAAGTTATAACCATTTAACTTGCAAGATGTTAAGCATTGGGAAGTTTGCTTCAATTTGTCTATATAAAGTAAAGTTGATCACCAGAACCCTACTGATGCTAAAAGCTTTTCTCATTCACTTCAatttcagtgtttacagtgtagaTTTCATGTTCTGTACTCATGGGTTCCAAACTTTAAGACAGAAATCAAACCGGACTGACACAGGAGCACTTAAGGGATTCACCAGCAAAAGGAAATGTGCATTAAACTGCTGGTACAGTAGATATATTAAGTCGTACACAACAGATTGTGGGTTTTCAGCaccttgtttttgtgtttatagttttttttcccccaatgtgTGTAAGCCTCACAACGTTGCCAAAGATCTGGTCTCCCTTACTCTTGGCACTTCAATGCTGAAATCgttaaatgttaacatttaatatgagtgtggttttttttaaatctgtaactAAGCTGATTTCTAAGTGTAAACACTGGCATTCTCTTATTTACCAAATCaactttagaaaaaaaacagaacacagcTATACATTCCCCAACATTATAATCTTTAAGTCAGAAAAGCACAACCAAGTAAAATACAAAGTACTGcgtgtaattgttattattttttgtctgtatgTCTGCAAGAGGCTTAAATTTGCATGGGTGCGGGGGGTGCTTTTAGAGTCCTTAGTGTTTAACTAAGCAGTGTTTATTAGCACTAGTTTCTATTCAGCTTTTCAGAGTTCTATTTTTATGTTACTTTTTTTCTTAGATCTTTGTTTACAGGGAAAAATagacttaaaacataaaaaggcaaTCCATGCTCATATCCTCTTGGATTTTATGTATAttagaaattacaaaataaagtttaagGTTTAACTTCTAAAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32217 lncRNA downstream 2477 27353968 ~ 27355254 (-) True G25697
TU32167 lncRNA downstream 100698 27254229 ~ 27257033 (-) True G25655
TU32126 lncRNA downstream 287632 27069886 ~ 27070099 (-) True G25620
TU32123 lncRNA downstream 328437 27028971 ~ 27029294 (-) True G25617
TU32121 lncRNA downstream 358185 26999306 ~ 26999546 (-) True G25615
TU32258 lncRNA upstream 59238 27429757 ~ 27540936 (-) True G25726
TU32264 lncRNA upstream 67489 27438008 ~ 27451511 (-) True G25730
TU32269 lncRNA upstream 130431 27500950 ~ 27504962 (-) True G25735
TU32282 lncRNA upstream 182978 27553497 ~ 27554110 (-) True G25746
TU32284 lncRNA upstream 192209 27562728 ~ 27563018 (-) True G25748
AMCG00007705 mRNA downstream 23344 27324701 ~ 27334387 (-) True AMCG00007705
AMCG00007706 mRNA downstream 50600 27293427 ~ 27307131 (-) True AMCG00007706
AMCG00007699 mRNA downstream 144967 27199643 ~ 27212764 (-) True AMCG00007699
AMCG00007695 mRNA downstream 876853 26479031 ~ 26480878 (-) True AMCG00007695
AMCG00007694 mRNA downstream 1085281 26262988 ~ 26272450 (-) True AMCG00007694
AMCG00007713 mRNA upstream 148019 27518538 ~ 27532721 (-) True AMCG00007713
AMCG00007712 mRNA upstream 195648 27566167 ~ 27569541 (-) True AMCG00007712
AMCG00007719 mRNA upstream 297002 27667521 ~ 27672745 (-) True AMCG00007719
AMCG00007722 mRNA upstream 502744 27873263 ~ 27879135 (-) True AMCG00007722
AMCG00007724 mRNA upstream 508741 27879260 ~ 27884397 (-) True AMCG00007724
TU31949 other downstream 1726139 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 2092780 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 3089810 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 3385066 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 6885027 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 7498916 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 9869570 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 10124392 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 10197098 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 10200438 37570957 ~ 37571488 (-) True G27439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU182185 True 2300 lncRNA 0.45 5 NC_047603.1 23427860 ~ 23436830 (+)
striped catfish (Pangasianodon hypophthalmus) TU90615 False 1749 lncRNA 0.36 2 NC_047599.1 2684516 ~ 2753806 (-)
mexican tetra (Astyanax mexicanus) TU90615 True 2851 lncRNA 0.45 5 NC_035903.1 28207537 ~ 28220857 (+)