RNA id: AMCG00007706


Basic Information

Item Value
RNA id AMCG00007706
length 625
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00007706
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27293427 ~ 27307131 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATAGGGCTTTCAGGGGGAGGGAACTTTGTGACTCAGACCCAAGACAGTTGCTATAACTAGTGGCACAGATGAggcagaagcagagagagagagagagagagagagagaggggggtgagtgagagagagcgcaaagagcagagagcagagcaCCAAGCACTAAGAAGCAGGTTCTTTCTGTCACACTACAAGACACTGCGTCCAGACTCCTCATTCACAGCTCCAACACAGCCCTCAGCAGCTACAGAAATGCCCAACTTTGCCGGAACCTGGAAGATGAAGAGCAGTGAGAATTTTGATGAACTTCTTAAAGCTCTAGGCGTGAACGCCATGCTGAGGAAGGTGGCTGGGGCTGCTGCCTCGAAGCCCCATGTAGAGATCAGGCAGAACGGAGAGCAGTTCTACATCAAAACCTCCACCACCGTCCGCACCACCGAGATCAACTTCCACATCGGAGAGGAGTTTGAAGAGGAGACGGTGGATGGCAGGAAATGCAGGAGCCTGGCGACTTGGGAGACTGAGAATAAGATGTATTGCAAGCAGACGCTAGTAGGTGGAACCGGTCCAAAAACCTACTGGACAAGAGAACTGAGAGGTGATGAACTGATCTTGaggAACTTCTAG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K17337 CRABP1; cellular retinoic acid-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32167 lncRNA downstream 36394 27254229 ~ 27257033 (-) True G25655
TU32126 lncRNA downstream 223328 27069886 ~ 27070099 (-) True G25620
TU32123 lncRNA downstream 264133 27028971 ~ 27029294 (-) True G25617
TU32121 lncRNA downstream 293881 26999306 ~ 26999546 (-) True G25615
TU32027 lncRNA downstream 1222579 26053764 ~ 26070848 (-) False AMCG00007687
TU32217 lncRNA upstream 46837 27353968 ~ 27355254 (-) True G25697
TU32249 lncRNA upstream 50600 27357731 ~ 27370519 (-) False AMCG00007704
TU32258 lncRNA upstream 122626 27429757 ~ 27540936 (-) True G25726
TU32264 lncRNA upstream 130877 27438008 ~ 27451511 (-) True G25730
TU32269 lncRNA upstream 193819 27500950 ~ 27504962 (-) True G25735
AMCG00007699 mRNA downstream 80663 27199643 ~ 27212764 (-) True AMCG00007699
AMCG00007695 mRNA downstream 812549 26479031 ~ 26480878 (-) True AMCG00007695
AMCG00007694 mRNA downstream 1020977 26262988 ~ 26272450 (-) True AMCG00007694
AMCG00007693 mRNA downstream 1131913 26136652 ~ 26161514 (-) True AMCG00007693
AMCG00007687 mRNA downstream 1225892 26060929 ~ 26067535 (-) False AMCG00007687
AMCG00007705 mRNA upstream 17570 27324701 ~ 27334387 (-) True AMCG00007705
AMCG00007704 mRNA upstream 50604 27357735 ~ 27370382 (-) True AMCG00007704
AMCG00007713 mRNA upstream 211407 27518538 ~ 27532721 (-) True AMCG00007713
AMCG00007712 mRNA upstream 259036 27566167 ~ 27569541 (-) True AMCG00007712
AMCG00007719 mRNA upstream 360390 27667521 ~ 27672745 (-) True AMCG00007719
TU31949 other downstream 1661835 25630795 ~ 25631592 (-) True AMCG00007684
TU31883 other downstream 2028476 25264332 ~ 25264951 (-) True G25422
TU31562 other downstream 3025506 24265824 ~ 24267921 (-) False AMCG00007637
TU31390 other downstream 3320762 23971671 ~ 23972665 (-) True G25026
TU30382 other downstream 6820723 20471111 ~ 20472704 (-) True AMCG00007500
TU33771 other upstream 7562304 34869435 ~ 34869807 (-) True G26961
TU34246 other upstream 9932958 37240089 ~ 37242983 (-) False AMCG00007929
TU34303 other upstream 10187780 37494911 ~ 37499392 (-) True G27416
TU34324 other upstream 10260486 37567617 ~ 37569284 (-) True G27437
TU34326 other upstream 10263826 37570957 ~ 37571488 (-) True G27439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066597 True 921 mRNA 0.45 4 NC_007118.7 48319916 ~ 48342750 (+)