RNA id: AMCG00007711


Basic Information

Item Value
RNA id AMCG00007711
length 1614
RNA type mRNA
GC content 0.53
exon number 15
gene id AMCG00007711
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27533469 ~ 27549963 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCCAGCTCGGATCGGATCCCCCCTCCCTTCCCCGAGTCTGAGGAGCAGGAGCCCGAGCCCCACACGGGACACGGCGACAGCGACGAGGGGGAAGATATATTCACAGGCAGTAGCAACCTGTCCGAACCCAGTAAGAACCCCCCTCCTCAGCCTATTGATGTCTTCAGTACAGATGAGGCCACCAATGTCACTACTACCAGCAACACAGTCACCAACTCCACTGATGGGACCAATGGGCTACAATCCGATAATGAAGATCAGGACATATTTGCGGAAGCCACCGTTGAGCTGTCGCTGGACAGTCCTCGCAACGACCGGAAGAATGAGCCGTCCAAGCCAGCAGCATCTATGCCTGCCCTCACCATCACCCCCAGCACTTCCAAAACTCAGCCCCAGACCCAGACCCTGGAGGAGctggaggaagaggaaagcGAGGACAAGTTTGACCTGAATATTGCAGTTACCAATCCAGAAAAAATCGggGATGGCATGAATGCTTATATGGCTTATAAAGTGTCAACACAGACCACGTTGCCAATGTTCAAGAATAAGACCTTCACAGTGAAGCGGAGGTTCAGCGATTTCTTGGGGCTGTACGAGAAGCTGTCTGAAAAACACTCCCAGAACGGCTACATTGTGCCTCCGCCGCCAGAGAAGAGTATATTAGGAATGACCAAAGTGAAAGTGGGCAAGGAGAACTCGTCCTCAGTGGAGTTTGTAGAGCGGAGACGAGCTGCGCTGGAAAGATATCTCCAGAGGATAGTGTGTCACCCGTCATTGTTACAAGACCCAGATGTCAGAGAATTCCTGGAAAAAGACGAGttacCTCGGGCGACGGGCACACAGACCCTGAGTGGGGCTGGCTTCTTGAAGATGATAAACAGAGCGACCGATGCTGTGAACAAGATGACCATTAAGATGAATGAGTCTGATATTTGGTTTGAGGAGAAGCTGCAGGAGGTGGAGAGCGAAGAACAGCACCTGCGAAAGCTGCACACTGTGGTGGAGTCGTTGGTCAACCACAGGAAAGAGCTCTCCAGCAACACGGCCATCTTTGCCAAGAGCCTGGCCATGCTGGGCAGCTCTGAGGACAACACAGCGTTGTCGCGGGCGCTGTGCCAGCTGTCCGAGGTGGAGGACAAGATCGAGCAGCTGCACCAGGAGCAGGCCGGCAGCGACTTCTTTATCTTCGCCGAGCTCCTCAGCGACTACCTGCGGCTGCTGGGCGTAAGCTGCTTTGACCAGCGTATGAAGTCCTGGCAACGCTGGCAGGATTCCCAGACGATGCTCCAGAAAAAACGGGAGAACGAAGCCAAGCTGCTGTGGGCAAACAAACCTGACAAACTGCAGCAAGCGAAGGATGAGATCTCTGAGtGGGAGTCCAGAGTCGCACAGTACGAGAGGGATTTTGAGAGGGTGTCTGCCAATGTCCGCAAGGAGGTGCTCAGGTTtgagAAAGAGAAAACCAGGGATTTTAAGACCCAGCTAGTGAAATATATTGAGTCACTTCTACATACACAGCAGCAGaatTCCTCAATTCTTACTCACCCTTGTCCTCAGGCTGCTGCATTCAACGGGGAGAGAAGGCACTGTAAAGCACCTACTACC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17917 SNX1_2; sorting nexin-1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32219 lncRNA upstream 177392 27355874 ~ 27356077 (+) True G25699
TU32194 lncRNA upstream 203267 27328947 ~ 27330202 (+) True G25677
TU32191 lncRNA upstream 226403 27303848 ~ 27307066 (+) True G25674
TU32170 lncRNA upstream 251359 27280657 ~ 27282110 (+) True G25658
TU32155 lncRNA upstream 276471 27254218 ~ 27256998 (+) False G25645
TU32235 lncRNA downstream 16732 27566695 ~ 27569353 (+) True G25709
TU32236 lncRNA downstream 16732 27566695 ~ 27569297 (+) False G25709
TU32289 lncRNA downstream 20580 27570543 ~ 27571491 (+) True G25753
TU32393 lncRNA downstream 520383 28070346 ~ 28078121 (+) True G25819
TU32410 lncRNA downstream 554639 28104602 ~ 28109590 (+) True G25827
AMCG00007709 mRNA upstream 16767 27505666 ~ 27516702 (+) True AMCG00007709
AMCG00007708 mRNA upstream 28500 27478011 ~ 27504969 (+) True AMCG00007708
AMCG00007707 mRNA upstream 85031 27429902 ~ 27448438 (+) True AMCG00007707
AMCG00007703 mRNA upstream 177994 27351223 ~ 27355475 (+) True AMCG00007703
AMCG00007702 mRNA upstream 185118 27334925 ~ 27348351 (+) True AMCG00007702
AMCG00007710 mRNA downstream 3625 27553588 ~ 27566646 (+) True AMCG00007710
AMCG00007717 mRNA downstream 38707 27588670 ~ 27592548 (+) True AMCG00007717
AMCG00007715 mRNA downstream 62709 27612672 ~ 27619156 (+) True AMCG00007715
AMCG00007716 mRNA downstream 87254 27637217 ~ 27656565 (+) True AMCG00007716
AMCG00007714 mRNA downstream 113029 27662992 ~ 27667229 (+) True AMCG00007714
TU31514 other upstream 3338988 24192221 ~ 24194481 (+) True AMCG00007631
TU31151 other upstream 4339948 23189460 ~ 23193521 (+) True G24824
TU30868 other upstream 5250511 22281700 ~ 22282958 (+) True G24606
TU30494 other upstream 6466686 21060401 ~ 21066783 (+) False AMCG00007514
TU29920 other upstream 8477336 19051342 ~ 19056133 (+) True G23893
TU32400 other downstream 533859 28083822 ~ 28094741 (+) True G25822
TU32501 other downstream 903046 28453009 ~ 28454707 (+) False AMCG00007735
TU32711 other downstream 1453132 29003095 ~ 29003773 (+) True AMCG00007769
TU32939 other downstream 2215865 29765828 ~ 29775035 (+) False G26258
TU33841 other downstream 8061153 35611116 ~ 35620801 (+) False AMCG00007873

Expression Profile